Clone Read LE_HBa0237N05_SP6_397711

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0237N05_SP6_397711
Primer
SP6
ID from Seq. Facility
LE_HBa_237_N05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1231 raw
Sequence
>LE_HBa0237N05_SP6_397711 (raw untrimmed)
GGCCCACCACACACACAGCAGAGCGACTACGGAGACCACACACACACCNGAAAAGGAGGCCCCCCACCCTACAACGGGAGGAAGNGANGANANAAGNAAC
ANGCGACGAGCAAACAACGCAGAACGCCCACCCGGCACACGAACACCACCGCGACGAGGAAACCAAAGCACAAACGACCAACACACCCACGCCACCAAAC
ACGCCAAGAACGCAAGAAGGGCACAACACGCAACGAACAACACACCAACAAGAGAAAACAAACCAACACAACCACGCAACACCAACACGAGCCCACAGCA
ACGAAGCAGAGCCACCCCGCACCAGCACGCGCGCACAAACAGACAAACAACACACGACACGAGCACAGAGAGCNACGAGAGCCGAAGCGACCCAAGGACA
ACAGGCAAAACCGAACCGCGAACAGAAACGCACAACACCACAACACGGACCAAAACACCAACACCGACAACCAGCACGCCCGAAAACACACCAACAGCAA
ACACCGAAGCCAAACCAACAAAAACCCCACACACAAGCAGAGCACGGGACAACCAAGCAACCAACCACACCGACGAACGCACGACAGACCAGACAGAACG
AAAAAAGACACACCCACCAACACCACAAACAGAGAGCGAGACACACCCAAGCCCAAAACACCACCACAACACGCACACCGCCGAACAAACAGGACAAACA
AAAAAGAGCAAGCGCACACCCCGAGAGACCACACCACCGACACACACGGAAACAAAACAAAACAATCCGCCAACAAGCACAGACCACCCAAACACACGAC
AAAACACACGCCGCACACCCGCGAACGAACACAAGCAAACCAGCACGACAAGAACCCACACCCACACACACGAAAACAGCCAACAACACAGACCCAAACC
ACACACAACCCCACACCAGAAAGACACAAAAACACAGACAAAAGACACAAGCCGAAACAAAGACAGAAACAACACAGAACCCGACGGCCAACAGACAGCG
CACACCGCCACACCACCCACCCCCAACACCGACACACAAACACCGCACGAGACGACACAAACAAACCGCCACACACCAACCACCAGAACACAAACCGCAC
CAACGACCCGCCCCGCAGAGCCAAACACAGCCGAACAGACAACGCACCAACGAACAAAACGACACGGACCAACAACAACGGAGCACACGCGCAACAGAAA
AAACCAGCCAAAAACCACCGCACCAGCCGCC
>LE_HBa0237N05_SP6_397711 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0237N05
Clone
Clone name
hba-237n5
LE_HBa0237N05
P237N05
Clone type
BAC
Contamination
none
Estimated length
107,954
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found