Clone Read LE_HBa0118A18_SP6_40354

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118A18_SP6_40354
Primer
SP6
ID from Seq. Facility
LE_HBa_118_A18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
654 trimmed for vector and quality, 904 raw
Genbank Accession
DU059647
Sequence
>LE_HBa0118A18_SP6_40354 (raw untrimmed)
GGGGGGAGTTTTGTCTGAAGGAGGGATCAAAGTCCCTAGGTCACAGAATCAACAATCAAATTACGAGAAGAATTTCATTGCCATGGTGATAATTTTCTTT
TTTTAAGTAAGGTAAAGAAAATGATCTAAAAAGTAAAATGTCTAACTAGGAAAAGACTGGAACATTGTATCAGACAAACAAGGTACTTATTAATAAAATC
ATAAAAAAGTTACTGAATTTGATTTTTCCAGAAGAGGAGGGGAGTACGGCATCTCAAACTTCATTCTTCATAAACCACTCCACATATGCCTGTCAAGAGA
ATAATAAGTAGAAGTTAACATCTAAAAAAACTGGGCTAGATCAAAAGCAAGAATTGTTCATTTGTGCTTGGTAATTTTAGGCAACTCACCTGTACAAGTT
TGGTAATTTTAGGCTTTGAACGGGACAAATATTTTTTTTTTTCCNCCTGCGCCNCAGCGACGTGCCCNCCGNGAANTGAACCAANTACCTTATCAACCAC
CTTCTTAACAATTGTTTTATGAACTTCTCTACTCATTTTACCTTCTTTCCAAATGGGTTTTAGGATCTCCTTCACAAACTCTATCAGAGCATTTTTGAAT
AATCGCATCACCTTTTCGTTGTTGTTACCGCTTCCCTCCTCAACCTTTCCATGCAGATTCATAGCTCCTGGATGATCATTTTCTTCCACATTCTTCGACT
CCTCGAGAGCTAATTTATCCTTTTCATCGACATTCAACTAATTTCATCTTCTGCTTCTTTACTTCATCAATTTGATCATTGCTTCCAAATTCAGGATCCA
ACACTAAAATGTTGATTCTTCCTGTCCATGGAAACCTTTTTACTATCTCCTAATAAAATAGAATGAATTGGCGGGGGGGAACTTATTGGTTCTCAAAGTA
TTTA
>LE_HBa0118A18_SP6_40354 (trimmed for quality and cloning vector)
TCACAGAATCAACAATCAAATTACGAGAAGAATTTCATTGCCATGGTGATAATTTTCTTTTTTTAAGTAAGGTAAAGAAAATGATCTAAAAAGTAAAATG
TCTAACTAGGAAAAGACTGGAACATTGTATCAGACAAACAAGGTACTTATTAATAAAATCATAAAAAAGTTACTGAATTTGATTTTTCCAGAAGAGGAGG
GGAGTACGGCATCTCAAACTTCATTCTTCATAAACCACTCCACATATGCCTGTCAAGAGAATAATAAGTAGAAGTTAACATCTAAAAAAACTGGGCTAGA
TCAAAAGCAAGAATTGTTCATTTGTGCTTGGTAATTTTAGGCAACTCACCTGTACAAGTTTGGTAATTTTAGGCTTTGAACGGGACAAATATTTTTTTTT
TTCCNCCTGCGCCNCAGCGACGTGCCCNCCGNGAANTGAACCAANTACCTTATCAACCACCTTCTTAACAATTGTTTTATGAACTTCTCTACTCATTTTA
CCTTCTTTCCAAATGGGTTTTAGGATCTCCTTCACAAACTCTATCAGAGCATTTTTGAATAATCGCATCACCTTTTCGTTGTTGTTACCGCTTCCCTCCT
CAACCTTTCCATGCAGATTCATAGCTCCTGGATGATCATTTTCTTCCACATTCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972234
Expected error %
2.49381
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g18640.1 Score 76 E Value 2e-14 Identity 13.30% Align. Length 329bp (50.31%) Frame 3
68416.m02368 zinc finger protein-related contains similarity to zinc finger proteins (CCCH type)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB02222.1| Score 76 E Value 8e-13 Identity 13.30% Align. Length 329bp (50.31%) Frame 3
unnamed protein product [Arabidopsis thaliana] ref|NP_188494.1| zinc finger protein-related [Arabidopsis thaliana] dbj|BAD43560.1| hypothetical protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD93829.1| Score 76 E Value 8e-13 Identity 13.30% Align. Length 329bp (50.31%) Frame 3
hypothetical protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118A18
Clone
Clone name
hba-118a18
LE_HBa0118A18
P118A18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found