Clone Read LE_HBa0242E24_SP6_403857

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0242E24_SP6_403857
Primer
SP6
ID from Seq. Facility
LE_HBa_242_E24-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1700 raw
Sequence
>LE_HBa0242E24_SP6_403857 (raw untrimmed)
GAAGGGGGAACGGAAGCCGAGCCGAGGGTGTCAGGGGAAGGGGAAAAACGTAATGGAAAAGTGGAAAGGGGGGGAGGAGGAAATCTGGAAATGGGGCGGC
CGCCGTATTTTAAATAAGAAACATTCAGGAAAGGGAGGGGAAGGGGAAAATAATAAAAGGGAAACCGGGGGGAGAATAAGCCCCCTTGTTAGAAAAGAAG
GAACGGTGGTGTGAGGGAGGGAAAAAATATGGGTGGAAGGGAGGGGGCGAGGGGGGGGGGAAAATGAGATGAAGAGGGGAAGAAGGATGGAGGGGAGTGG
TGAAGAGGGGGAGGGAGGGAGAGGGTGGGGGAGAAGGAGGAGTTAAGAAGAAAAGAGAATATAAGGAAGGGAGAGGAGAGGGGGGGGAAAAAGAGAGATG
TAGGAGGAGGATAGTAAGGAAAAGAAAAGAAAGGGGAGGGCGAGTAGGGAGGTGAATGGAAAGAGGAAGGAGAGGAATGGGAGGGGAGTGAAAAAGGAGT
GAAAAGGAGAGAGAAGGGGAGGGGAGGGAGGGTAATAGTGAGAGGTGAAATGAGGAGAGAGATAGAGGGGGAAAGGATTGAAGGAGAGAGGAGGAAGAGA
GAGGGAAGGAAAGGGGAGAAGAACAGGAGGGGGGAGGAGGAGAAAGAGGGGAGAAGAGAGGGGGGCACAGAATGATGAGAGAAGAGTAGAAGGAGAGGAA
ATGAAGTAAGAGGGGGGATAAGAGGGAAGTAGGGACGGTGGATGGAAGGGAGAGAGAGGGGTGTGAGGGAAGAGAAGAGGGGGGGGAAGGATGAGAAGGA
GAATGGATGAAAGAGAGGGTAGAGGGGGATGGAGTGAGAAGGAGAGAGTGGGGAGTGAAAAGGGGTGAGGAGTGAGAAAGGAGTGGGTAAGGAGAGGATG
GAAAGGATGAAAGGAGAAGAAAGAGACATAGAGGGAAGAGGAGAGGAAATAGAGAGTGGGGCGAGAAAAAAGAAAAGAGGGGAGAGAGGTGGGAGAAGAG
CAGGGAGAGAGATGGAAAGGTAAAGAATAGAGGTGAAAGAGAAAGAGGGAAGAGAGAAGATGAAGAGTAGAGGAGGTGAGTTGGAGTAGTCGGGAGGGAG
AAGGAAGCGGGAGGGAGGGGAGAAAGGTAAGGAGTGAGAGGAGGCAAGAGGTAAGGAGGGAGGGAGAGAGAGGGAGGTGGAGAAGAGAGTGAGGGGAGAG
AGGAGAGGGATGGCAAAAGAAGGGGTATAGATGAATAAGGAGAAGAGAGTAGAGAGGAGAGGAGTGATGGGGAGAGAGTAAGAAGGTGGGGGAGGAGAAT
AGGAAAGGAGGAAAGGGAGGAAGGAGAGGATGAGAAGAGAAAGGGATAGGGTGGGGAAGAGTGAGAAGGGTAGGAGAGGAGGAGAAATGGGAGGAGAGGG
GAAGAAGGGGAGAAAGAGAAAGAGTGGAAAGAGAGGGAGGGGGGAAGAAGAAGGAGAGTGGAAGAAGAGGAGGGAGGAGGTGGAGGAGAGAAGAGGTGAG
AAAAGAGGAGGTGGTGAGGAGGATGGAAGGAAGAGGGAAGGATGAGAAGAGAGGAGGGAGAGGAGAGAGTAGAGGGGGGAGTAGGGTGGGTGAGGAGGAG
AGAGGATAGGTGGAGAGGGTAAGGAAGAAGAGAGGGCAGAGAATAGAGGGAGGGAAAGGAGATGTGAGGGGGAGAGTGAAAGAATAGTAAGGATGGAGTG
>LE_HBa0242E24_SP6_403857 (trimmed for quality and cloning vector)
GGG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for contaminants
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.22155
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0242E24
Clone
Clone name
hba-242e24
LE_HBa0242E24
P242E24
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found