Clone Read LE_HBa0118B10_T7_40387

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0118B10_T7_40387
Primer
T7
ID from Seq. Facility
LE_HBa_118_B10-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1455 raw
Sequence
>LE_HBa0118B10_T7_40387 (raw untrimmed)
GAGATGAGCATTCACTCTCAGACNAGCACGACANACTGGATGCTCAGAGTGGCACAGCTCTCTCTCCACTCACTATATNAGATGGTGATCGGAGCAGGCN
ANGTNGATTCAGCCACACANTCATCAGAGCATCTGCTANGNCAACGCCAACCTCTAGCATCTCACATACGAGCTCNCGACAGACGCAGCGACAANTCAGA
CTGATACGCACGTAATCGCTCTACGTGCTGTCTCCTCGCGACGTCATGCATCTGTNCGTANTGCATATNGTGCTCAGCACAGTNCTCTGTTGTGCGTGTT
GGCTTCGTTCGCTATCTGTCACCTGCCGTACGCTTGCNTGTGCNGCGCACGATACATGTATGTGGAGACAGCAGTACACTGACATCATATATAGCCGTCG
ACATGCTATCGCTTCCTAGNAGTGTCGCACAGTCTAGCGCNTACGTGCATACTCTCAGCCGTGCAGCACACGGACGCGAGATGNCGTNCGTATGCNCACT
TACTGACTACCCNCNATTCATACTATCGTCTGCGTATCTCTGCTGNCGATNGCCGCTGGTCTGTGNTCTCTCGATGATGCATACATGTCCTAGCACGCCT
CNCGCTNGTNANCTGNACTGCGAAGACGACNGNCGTGCGGACGCNGCCTAGGCTACTCGTATGTAGNGCNAGAGGNAGCTCGGTGCGCTGAATGTCGCNG
NCTCACGCATCATCTACTATGTCATACTGACTTGTGATCTATGCGAGATGCTNGTGTGCCTCGATAGTCCCNTACTCACTCGCGTACCGTGTNCGTNAGT
CTATTANACGTGTACGNTCTACNCACGGAATGTACTGGACTGATGATCAACAGCAGANCTCTATGTAAANCANATGACAACTAGAGCNATGAAGGNCACA
CCACACATCAGATGTGACGAACATATCGACTACGGATCGAACTCGCACNGGNCTCGNCTGTCTCTGACTCATATATGTNGCACCTGTCTTNAGTCGATCT
NTCCNTCTACTCTCCAGTACGCGTCGAGCACGACTCTATTATGTTCAATTACGATGTATGNTAGTAGTATGANCTAGCGTGATTGACTGTCACGCAACTC
TGTTGCTCACGCCCTGTATATGTGGACTACATAGTCANTGTAGTATGTACTGTGCGATGGACACTGATGNTTCAATANGACGTTCACTTCACTACGTATG
TAACGTGCAGTCATGCGTTGCGTGNACTCTCGCGACTGTGCTACCTCTCTGTGCGCCTNGATACTGCTATCGCTTGTTNATCTTACCGATGCGCAAACAC
TGTATCTGANGTTGTCTCTGTTCTATACANCATACTCNTCACNCATCTGTCTCTCATCTANGCACGTCTCACTGCTGATTGNGNCATGCTATGCATCCTC
TCACGCACTGGTGCCTCGTACTCTCGTATAGTAGTGCGAACCGTGTGTCTCAGCC
>LE_HBa0118B10_T7_40387 (trimmed for quality and cloning vector)
TC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
4.28712
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0118B10
Clone
Clone name
hba-118b10
LE_HBa0118B10
P118B10
Clone type
BAC
Contamination
none
Estimated length
99,105
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found