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Clone Read LE_HBa0246A12_SP6_404955

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246A12_SP6_404955
Primer
SP6
ID from Seq. Facility
LE_HBa_246_A12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
47 trimmed for vector and quality, 1115 raw
Sequence
>LE_HBa0246A12_SP6_404955 (raw untrimmed)
CAGTAGCACTTAGCNTACACATCGACGGACACAAGCACCATGGTAGTCGCATTGAACTTTGTCCCATGCCTTTGAAGGCGTTTGGGTCTGCAGAGGTATA
GTGGAGGGTACTTTAAAAAAAGACTAATTCCTTTTCTAGTCCCCCAGATGATGGGACGTCAATTAACTTAAGGTGCGTTGATGGACTCCCCTGAAATGGG
AACTTTTGGTTGGTTCTGCTTACACGGTAGGGGACACTATTAGGGAATTTTGTGGGAACTAGGTGGGATTGGACCAGATCGTAAATCTTTATATAAGGGC
TGGAATACATTAGAGATGGTGATGGAAAGATTATAGAGTGTATATACTTAAAACTAGATATAGTTTATGATTAATTATATCTAGTATTTTTTTAAGATTT
TATCTCAGTAAAGAGACGTTGTAGTTTTTATATAAATTTGGGGGAGTAATTGATGGAACATAGGGGTTGAGTGCGTATTAAAGAAAATGTTTAAAATGTT
ATATTATTTTTAAACATTTTAATTTTAGATTTTTGATTTTTTGTAAAATTTATTTTTATTATAATCAGGGGGGGGGGAGGGGTGTTTTCTTTTTATTTTT
CTATTATCATTATAAATTTTATTAAATAAAATTTATAGTAATTATTATATTATTATAATTTTAATTACCATAAAATAAAATTTTTAAATATATAAAATAA
CTAATATATAAATATTTTTAATATTAAAATTAATATCTATTATTTTACATATATATTAACTAATATCCATTAATAATATTCAATATTATATTTCAATTCT
ATAATTAATAATTTATAAATTATTTTTAAATTAATAATCTAATATTTATATAATTTAAAATTTTCTATTTGAAACAATTTTATTAATTATTTATACATTT
AATATTCTTAACTTATGATAATTATTTTTTTATAATATTTTTCTTATATATTATTATATTGAATTATTTTTTCATTTTTCTCTAATAAGTATTGAAATTA
TTGTATTAAGTATGTAGATTAACTTGTTATTAATTATCATTGTAGTCAAGTAATATATAAGATTATTTATTATATGTATTATAAACTAATTTTTATATAT
AAGTTTGAATGTTAA
>LE_HBa0246A12_SP6_404955 (trimmed for quality and cloning vector)
CTAGTCCCCCAGATGATGGGACGTCAATTAACTTAAGGTGCGTTGAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956977
Expected error %
1.17852
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246A12
Clone
Clone name
hba-246a12
LE_HBa0246A12
C12HBa0246A12
P246A12
Clone type
BAC
Contamination
none
Estimated length
67,047
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found