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Clone Read LE_HBa0246I01_SP6_405657

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0246I01_SP6_405657
Primer
SP6
ID from Seq. Facility
LE_HBa_246_I01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
49 trimmed for vector and quality, 959 raw
Sequence
>LE_HBa0246I01_SP6_405657 (raw untrimmed)
ATAGATAGTTTTTATTTTTTTGTGTGAACTAAATGGGTATGTCTTGAATTAGTGTTAGGAGCCATTAAGAGGAGNAANAAAAGAAAAAAAGAAGAAGAAA
CAGCCCGTAAAGAGTGAGAAAGNTNAAGCTANGGAGATTTGNNGNGCTGAAGAGGCTGCNCNGNGGGCAAAAAGGGAGATTCTAGATAATGGTGGTAATA
AATTAGGAAGNAAGGGGGAAAGGGTTTATTTTTAGTGGNTATATAAAAAGATTTTTTATTGTGATATTTGGAAAGTAAGGGAAGTTTTTTTTTTTGTTGG
GNTGTTTATGGAATAATTTGTTTTTAATATAGAATGTGTTAATAAAAATTTAATGTGGGAATTGTGGTGGTTNTTGATTAATGGAAAGTTAAATTGGGTA
GNNTTTTAATGGTTTGGGGTTTGGAGTTTAAAAATGGAAATTTGAAGTGGGTTTTGGGTAAAAATTATGTAATTGAATTGTNTAGAGGTAAATAAAATTT
TTAAGTGGGGTTGGAAGAAATTAATAAAAAAGGGGGTTTGAAAGTGTTTAATAAAAAAGGGGGTAAGAAATATGGGTAATTAAAGGGAGGGGATTGGGGT
TTTTTTTTTTAAAAAAAATTGGGAAGGTAAAATGTGGAGGTTGTTTTTAATAAAATTTGATAGGAAAATTAATAAAAAGAATTTTTTGTGTGATTAGGTT
TTGATATTGAAAGTTAAGAAAAAAAAAAAAGGTTTGTTTTTAATTGTGAGGGAGGGTAGAGTTTTAAGTGGTGGGATTTTAATATTAAAAATAGGAAAAA
TTTTTTTAGGGATAAGTTATTAAAAGGAGGGGTATAGGGTGTTTAATTTTAAAAAAAAATTAAAGTTTTTGGTGATAAAAATAAAATATTTGTATTTGAG
AAAGTGAAATGTAATAAAAAAGGGAAGGGATAAAATAGGAATTTTTAGAATTATAAAAG
>LE_HBa0246I01_SP6_405657 (trimmed for quality and cloning vector)
TTTTATTTTTTTGTGTGAACTAAATGGGTATGTCTTGAATTAGTGTTAG

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
  • Not screened for contaminants
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.755514
Expected error %
1.00241
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0246I01
Clone
Clone name
hba-246i1
LE_HBa0246I01
P246I01
Clone type
BAC
Contamination
none
Estimated length
58,833
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found