Clone Read LE_HBa0230N17_T7_405880

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0230N17_T7_405880
Primer
T7
ID from Seq. Facility
LE_HBa_230_N17-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1494 raw
Sequence
>LE_HBa0230N17_T7_405880 (raw untrimmed)
CCTATCTTGGCTAGGGCATTGCTAAAGCTATTCCTTTTATGTTGTATGTGTGAAATATTGCCACATATCTTTGTTTTTATTGTTAGAACTATAACTTTTG
TCAGAGAATGGAACGTGGAGAGAGCTCTCTTTTATTTTGGATAAACTCTCTGTGATATTTAAATAACAGAAAAGTATTAATAGGTTTATAATATGGTTAT
TAAGGTTTATTCTCCCCTCCTTTTTTAATATAAGGCCTTTCTCATATACATAGTGATCCTTTTGCTGGTTCCCAGGATAACACCCCCCAAACATAACAAA
ATAAAGGCCTTAGCATTAATAGAACCTTAGGTATTTTCTCTCTAAAATAATACTCATAACATATATTATTAAAAACCCTTCTTTCTCTAGGAGGGGATAA
ATAATATAATATTTATGTCTTACACAACTGGTCGGCTGCCCGCCACCATTTCGGTTGTATTTTTTATTGTGTTGTTTGACTATATATATAGATGATATCA
ATTGTGTCCTGACCTCTAAGATGACTCGTATTATGTGGTGTATTTTTCTTATAACTCCTTGCAACGGAAGAGTTTATTATAAATAGTGGGTCTTTAAGAA
AACATTATGGTAAACACTATGTGTGGCGCCCCTGTATTATTATATAACTATATAAACTATTCCCTTCCTCCGTGAAATTATTAGGGTGTGAAGAGCAATC
CTCTTTTATATAATGGTTCATCTTGCGTTTCTTTTTCACAATAAAAACACATGCTCTGGTCTTCCCTTGCAAAATATTATAATTATTTTCTGGATGGTGG
TGGTTTTGTTTCTCTCCCTCCTACTATATAATATATAACTATAGTAGTGTGGGTGGCGGTTCTCTCCATCCATCTACACATAATAATATAGGTGGGTGTG
TTGTGGGTGATGATGTTATCCATCATATGACTACTCATTTACCAGTAATATATTCTTTGTAGCGTTTATATTTATATAAGAGATGTTCTCTATTTACTAT
ACCTCTTACTTAGTCATAATATGTGTTGTATTANACTACTACCATAAACAATTATATTATCTGTTAATATTTGCTCTTAATATACATAGATGGTTTACAT
TGATGTCGTTTATGAGAGTCTGCTATACTTATTTTAATCAATTAACATAGTCATAGTTTTCTTGTGATTACTTCATTATTGTTCACTTACTATATATAAA
TTTATGTTCTGTCGCGTCGATATGATGATAATTACTATTCCCTCTACTAGCGTGGTGTGTTATATTAATATTTATTATATTGTATCCTATGTGTTCTCTT
TTAAATTATATCTCATTATATCTTACTTATACTAATTATTATATTATTTCTTCTCCGTGTGAGATACTTGATGATATAATTATACTATATATGCTATATC
ATCGATAGTGACTCATATTCTATTTTCTATAGTCTTCTTCTCATAATTTACGATCATGATTGTATGTACTCTTGTTATGGTGTATTATCATCTG
>LE_HBa0230N17_T7_405880 (trimmed for quality and cloning vector)
CTT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for chimera
  • Not screened for contaminants
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.718043
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0230N17
Clone
Clone name
hba-230n17
LE_HBa0230N17
P230N17
Clone type
BAC
Contamination
none
Estimated length
117,143
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found