Clone Read LE_HBa0231A04_SP6_406879

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0231A04_SP6_406879
Primer
SP6
ID from Seq. Facility
LE_HBa_231_A04-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
78 trimmed for vector and quality, 886 raw
Sequence
>LE_HBa0231A04_SP6_406879 (raw untrimmed)
CGCAGTAGGTATGAGCACTGATTTATAATCTGTAAACAAGAAAATAGAATTGTTAATTCGATGGTTCTCTTAGGGGATTCAGCAGGGGAAATCACAGGAA
CATCAATGCCTTCCAGGACCANNGATCATCGGCGAGGCANAGACNAGCAGCCAGCAGAAGCACCNGGCACACACAACAAAGGAATCAGGCCCACAGGAAC
AGAAAACGACACCNCGCGGAGGGGAGGGGGGCAAGGGGCCGAGCGGGGGAAGAACAAAGGAGGAAACACAGAAGGAACAGGGAAACGAGAACAGACCCCA
GGGAGAACGGCGCAGCAGAGGGAACGAGGCAAAGCAAAGAACGGAGCACGGAGGCCACGCAACGCGAGCACAGAGCGACACAGCGAGGACACCCAACGAC
CAAACACACAGGAGAGAGGGGGAGAACCAAAAGAAAGAAGGGGGGGGAGGGACAAGGCCCAGGAGACAAGCGCAGACGAGGCGAGGAAACACACACAACA
AAGGAGAGACAAGGACCAACAGAACCAAAGGCACGAAAAGAAGAACAAGGGCGAAGACCGAAGAACCCCCAAGAAACCGGCACAACCAACACAAGCCCAA
AAACACGCGCAAAAACGGAGCGAGAAAGACGAAACGGCAAGAGAGGCGACAGGCCAGCCAAGGAGACCCGACACAAGGCGGAGAAGCCAACACGCGGAGA
GACCCAGGCGAAGGGAACGCACGGACAGAAAAACGCAGCCAGAGAAGGCACAAAAACACCGAAGAAGCCCGGAGCGAGCACAAAACACAGCCACACGAAA
CGCAAGGCAAGCGAAAACACCACGCGCGGGCCGAGAGCCCGACCGAGGCAGGGGCAGAACGCGAAAGACGAAACAAAACCAACCCC
>LE_HBa0231A04_SP6_406879 (trimmed for quality and cloning vector)
ATCTGTAAACAAGAAAATAGAATTGTTAATTCGATGGTTCTCTTAGGGGATTCAGCAGGGGAAATCACAGGAACATCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.901582
Expected error %
2.69625
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0231A04
Clone
Clone name
hba-231a4
LE_HBa0231A04
P231A04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found