Clone Read LE_HBa0121A19_SP6_41892

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0121A19_SP6_41892
Primer
SP6
ID from Seq. Facility
LE_HBa_121_A19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
0 trimmed for vector and quality, 828 raw
Sequence
>LE_HBa0121A19_SP6_41892 (raw untrimmed)
GTTTCCTTTTGACGGCTATTTTCAGAAGAGTACTAAGTAAGATTGTTATGTGTCCGGTCGATTCTCCTATAAATCAGCTTGCATGCCTGCAGGTCTACTC
TGGAGGATCCCCGGGTACCGAGCTCGACTTCTCCCTATCGTGAGTCATATTACCCTTCACTGGCCGTTTTTTGACATCGTCATGACTGGGAAAACCCTGG
CAGTTCCCATTTTAATCGCCTTGCATCACTTCCCCCTTTCACCAGCTGGCTTAATAACTAAGATGCCCTCACCGATCTCCCTTCCCAACAGTTGCTCACC
CTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACTCATCTGTGCGGTATTTCACACCCCATATGGTGCACTCTCATTACAATCTGCTCTGATG
CCTGCATATTTAATCCAGCCCCGACTCCCGCCAACACCCGCTGACTCCAACCCCTTGCAGTCGCACCCAATATTTCTTTTCATTATGTTTTCTATACCAA
CTTATTACCAAGGATCCCAGACTTATTTTGGACCTTCCACTAAGGAAACTTATAAAGGTCCGCATTTGCCATTATTTCTTCTGATAAAGCAAAAAACCAT
AAATTTGAAGAACAATTTTTTAACCCTAACTATGAAATCAAAGAAATTATAAGCCCTAAAAGCTTCAAGCTTTTTCAAAATTGAAACTACAATTGAATGT
TTTGACAAGTAAATTCAAGTTTTAAGCTGATTTGGGAGAGAATGAAGGAATATACATTTGAAAATTGATAAAAAAGGATAAAAAAGAAGAGTTTGAATTT
GGGGAGAAAATGGAAATTTTAACCTTTT
>LE_HBa0121A19_SP6_41892 (trimmed for quality and cloning vector)

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Probable foreign DNA contamination
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
3' read, short insert
Quality trim threshold
14.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0121A19
Clone
Clone name
hba-121a19
LE_HBa0121A19
P121A19
Clone type
BAC
Contamination
none
Estimated length
111,789
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found