Clone Read LE_HBa0041A13_SP6_42648

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0041A13_SP6_42648
Primer
SP6
ID from Seq. Facility
LE_HBa_041_A13-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
31 trimmed for vector and quality, 913 raw
Sequence
>LE_HBa0041A13_SP6_42648 (raw untrimmed)
GCGCAAGGGACTTGTATGAAGACTATTTACCTTTAACAAGGAAGAGCATTTCGCAAAAGACTCATAGGGAAGAACAACCAAGGAATAAAGTAACCAACAT
GCCATTTCACATAAATGGGTTACAAACAAACTAAATATCCATCAATACTATGATTAGCCACACAACAAAAATAATGACACAAGGAAGGAGTGATTGACTG
TTTAGGAAGAGGGGGGAGTTACAGATATGCACTGTATATCAAGAGTCAGTCCTGTATTGCCATCCATCCGTGTCTGTATGCTGTCTCTTTTGTGCCTTTT
ATTTAATTATGTTGTATCCATGGCTATTCCTTCCCGACTAAAGTTTAGGGCCGGATCATGTTCTTTAGGGGGGGTCTTTCTAAAGCGCCCTTATGTCAAA
GATCCAGCGACACTAAACAATACACAACTTTACCCTCATCTTTCTACTCTCTTGCCTCCCCCTTTCTCTTCCGGCATGCACCATCTGTTTCTTTTTTTAT
TCTGGTGTCCCCCCCCCCCTGCTTTTCTAATTTTAACAAGAAATAAAAGCGCGAACACTTGATCTCACACGCTTCCCGCCCGTCTGGCCCCACTGAGCTA
CTTCCCCTTTCTGTTCTGACTTGCTATTCCCTTTTTATTACATTCTTTATACGCGTCACGCCGCCCCCCGATCGGACCGCGTTCCCGCCTCTTCCTTTGC
TATCGGTGTATCGTTTTGTACCCTCTTGATTTTCATCTCTTACTTAGGCATACCTATGATCCTGACTACCTTGTTCACCCGAGCTGGCGGTCGTGACCTA
TAAGCAGCATGTGTGTGACTCTTTGTCACCTACCCCGTTCTCCGCCGGTCTCTCCCTCCCTCTCGCCTCCCTCTCCCCTCATCTTGCCACTCCCTCTCGT
CAACTTATTTTCT
>LE_HBa0041A13_SP6_42648 (trimmed for quality and cloning vector)
AGGAATAAAGTAACCAACATGCCATTTCACA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.217495
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0041A13
Clone
Clone name
hba-41a13
LE_HBa0041A13
C03HBa0041A13
P041A13
Clone type
BAC
Contamination
none
Estimated length
122,512
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found