Clone Read LE_HBa0053L10_SP6_43938

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053L10_SP6_43938
Primer
SP6
ID from Seq. Facility
LE_HBa_053_L10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
765 trimmed for vector and quality, 958 raw
Sequence
>LE_HBa0053L10_SP6_43938 (raw untrimmed)
GTATTCGGCCTTTCCATTGCCTCTTTTCACGATTTCAGAACTTTCAATGGTGTGGAGGAACAACAACGGTCTGTGACTGTATCACTGAACCATTCCTCCT
TCTGAGTGCATTTCTTCAAGCCCCATGCCTCCACAGCAAGTCTGCATTACAAAATTACATATCATTTCTCCGTTTCAAAAACGAATCTCCAATTATGTAT
GCTATGAAGTTGAAAATTTTGTTACTAACAGAGGTTTTACTTTTACCTTGTTGCTTTGCCAAGGCGAGCGTGTCTTGCAATCACATTATCAAGGCCTTCC
TCGAAAAGAAGGTCGAGAGCTGCTCTCAGACCATACAAAAGTTGGATGGAAGGAGTATACGGCCAATAAGTTCCCAGCTTGTAGAACTTAAGGTAATCAC
TCCAGTCAAAGAAAACTCTCACTGATTTTGCAGTTTTGCTGGCCTCAAGAGCCTTGGGGCTAGCACAGACTATCCCGAGCCCCGTGGGAAGGGAAAGTGC
TTTTTGGGAACCAGTAAGTGCCACATCTACACCCCATTCGTCCATACGGAAATCAAGTGCACAAATTGAGGACACTCCATCAACAAGGAAGAGGGCAGGA
TGCTGGTAGTGATCTGTCAGGCATCAATAGAAACAAGCACGAAACTTCAGAGATCGTGAATTTCATACATACTTTTCCTTATCTGAAATCAATTTTTCGA
AGAAAAAATGCATCAGTTTAGATACATTACCGAGTATTTTCCTTACAGTAGCCAAGTTGTTGGTAACTCCAGTGGCTGTCTCGTTATGCACAATGCAAAC
CGCCTTGATGGTATGAGACTTATCTTCTGCAATTTTCGAGGCCAAAACTTCAAGATTTGCACCTTGGCCCCAATCACTCTTCACAACATCAACGTCAAAA
TTGAGACGTTTCTGGTTGATCAATCCAAACAGAATGAACTGACGAATAAGAACCAACC
>LE_HBa0053L10_SP6_43938 (trimmed for quality and cloning vector)
TTTTCACGATTTCAGAACTTTCAATGGTGTGGAGGAACAACAACGGTCTGTGACTGTATCACTGAACCATTCCTCCTTCTGAGTGCATTTCTTCAAGCCC
CATGCCTCCACAGCAAGTCTGCATTACAAAATTACATATCATTTCTCCGTTTCAAAAACGAATCTCCAATTATGTATGCTATGAAGTTGAAAATTTTGTT
ACTAACAGAGGTTTTACTTTTACCTTGTTGCTTTGCCAAGGCGAGCGTGTCTTGCAATCACATTATCAAGGCCTTCCTCGAAAAGAAGGTCGAGAGCTGC
TCTCAGACCATACAAAAGTTGGATGGAAGGAGTATACGGCCAATAAGTTCCCAGCTTGTAGAACTTAAGGTAATCACTCCAGTCAAAGAAAACTCTCACT
GATTTTGCAGTTTTGCTGGCCTCAAGAGCCTTGGGGCTAGCACAGACTATCCCGAGCCCCGTGGGAAGGGAAAGTGCTTTTTGGGAACCAGTAAGTGCCA
CATCTACACCCCATTCGTCCATACGGAAATCAAGTGCACAAATTGAGGACACTCCATCAACAAGGAAGAGGGCAGGATGCTGGTAGTGATCTGTCAGGCA
TCAATAGAAACAAGCACGAAACTTCAGAGATCGTGAATTTCATACATACTTTTCCTTATCTGAAATCAATTTTTCGAAGAAAAAATGCATCAGTTTAGAT
ACATTACCGAGTATTTTCCTTACAGTAGCCAAGTTGTTGGTAACTCCAGTGGCTGTCTCGTTATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977721
Expected error %
0.269989
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g13360.2 Score 249 E Value 1e-66 Identity 18.80% Align. Length 716bp (93.59%) Frame 2
68415.m01475 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g13360.1 Score 249 E Value 1e-66 Identity 18.80% Align. Length 716bp (93.59%) Frame 2
68415.m01474 serine-glyoxylate aminotransferase-related similar to serine-glyoxylate aminotransferase (GI:21535798)[Methylobacterium dichloromethanicum; contains TIGRFAM TIGR01364: phosphoserine aminotransferase; contains Pfam PF00266: aminotransferase, class V]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAB95218.1| Score 251 E Value 2e-65 Identity 19.00% Align. Length 716bp (93.59%) Frame 2
putative serine-glyoxylate aminotransferase [Fritillaria agrestis]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ56192.1| Score 250 E Value 3e-65 Identity 19.40% Align. Length 716bp (93.59%) Frame 2
aminotransferase 1 [Cucumis melo]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053L10
Clone
Clone name
hba-53l10
LE_HBa0053L10
C12HBa0053L10
P053L10
Clone type
BAC
Contamination
none
Estimated length
59,056
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found