Clone Read LE_HBa0053L16_T7_43951

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0053L16_T7_43951
Primer
T7
ID from Seq. Facility
LE_HBa_053_L16-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
729 trimmed for vector and quality, 933 raw
Sequence
>LE_HBa0053L16_T7_43951 (raw untrimmed)
TTACGGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAATCCTAGGGGAAGTAAGCTATTTTTGTGGAACACAAACTGATGATCC
TTATGTTTATTCCTTTGAAGGGTTATTTCCAGGCGTTATTTGGATCTATTGAAATTCTATTATCTTCGATGCATGTTAAAAACCTGGTTGTGCCAGCTGC
TGAAGAGGCTAAATCCATCTGGACAAATAAACTGGGTTTCAGAAAGATGACTTATGAACGCGTGAGTGGATCTTTAATATTAGTATGGACAGATCATTTG
TTTTTACCTTGTTTATCTGATTCTCCCTTTGCATCATGGATGATAGTGTTGAAAGTTAAATTATAGATTCAATTTTCTTATAAAGATAGAGATTAGATTT
TAAGCCGCATAATGTTTGAGGCTACTGAAGCTAGATTTATTGTCAAGTTATGCACGCAAGTCCATTTCTAATTGCTGATTCAAGAGTTGGAGCTAGTGCA
AGCTGTAGGACGTTCTACATAGGATGTTTAGGTTGCCACAAGGCAATTTGCAGTACATTTGATCTGGAAATACTAGCAGACATAGCCCCCAAGGCCTATC
TCGAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGTCACAAGTTCAAGCCCCACACATGCAAAACAAAGCCCGGAATTTAAGTGGAGAAGGCTAGAGGGGC
GTGCCCATTATCCACTGAGTTAAGAAGGCTGTGATTGATCCTAAGGGCCGTTACAGATGGATTTCTGGGTTATCAAAAAAATTATTAAAAAAAAATAATA
CTAGTGGAACTAGCTTAAAAAGTCTTGGCTTCCCTCCTACTCAGCTGACTTCTTTTGTGAGGGGTTGTTTTTGAACTGATTTTTCCTTTTTGATCAAACA
AGGTCAAAAAAAAATGCTATTGAAGGACTATTT
>LE_HBa0053L16_T7_43951 (trimmed for quality and cloning vector)
AGCTTTAATCCTAGGGGAAGTAAGCTATTTTTGTGGAACACAAACTGATGATCCTTATGTTTATTCCTTTGAAGGGTTATTTCCAGGCGTTATTTGGATC
TATTGAAATTCTATTATCTTCGATGCATGTTAAAAACCTGGTTGTGCCAGCTGCTGAAGAGGCTAAATCCATCTGGACAAATAAACTGGGTTTCAGAAAG
ATGACTTATGAACGCGTGAGTGGATCTTTAATATTAGTATGGACAGATCATTTGTTTTTACCTTGTTTATCTGATTCTCCCTTTGCATCATGGATGATAG
TGTTGAAAGTTAAATTATAGATTCAATTTTCTTATAAAGATAGAGATTAGATTTTAAGCCGCATAATGTTTGAGGCTACTGAAGCTAGATTTATTGTCAA
GTTATGCACGCAAGTCCATTTCTAATTGCTGATTCAAGAGTTGGAGCTAGTGCAAGCTGTAGGACGTTCTACATAGGATGTTTAGGTTGCCACAAGGCAA
TTTGCAGTACATTTGATCTGGAAATACTAGCAGACATAGCCCCCAAGGCCTATCTCGAGTGGCAAAAGGTGGAGGATTTGTGGCTTAGTCACAAGTTCAA
GCCCCACACATGCAAAACAAAGCCCGGAATTTAAGTGGAGAAGGCTAGAGGGGCGTGCCCATTATCCACTGAGTTAAGAAGGCTGTGATTGATCCTAAGG
GCCGTTACAGATGGATTTCTGGGTTATCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966711
Expected error %
0.712761
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g53680.1 Score 70 E Value 9e-13 Identity 21.80% Align. Length 146bp (20.03%) Frame 1
68416.m05928 PHD finger transcription factor, putative predicted proteins, Arabidopsis thaliana
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g36720.1 Score 67 E Value 1e-11 Identity 20.70% Align. Length 149bp (20.44%) Frame 1
68415.m04505 PHD finger transcription factor, putative
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB67675.1| Score 70 E Value 4e-11 Identity 21.80% Align. Length 146bp (20.03%) Frame 1
putative protein [Arabidopsis thaliana] ref|NP_190936.1| PHD finger transcription factor, putative [Arabidopsis thaliana] pir||T45908 hypothetical protein F4P12.380 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0053L16
Clone
Clone name
hba-53l16
LE_HBa0053L16
P053L16
Clone type
BAC
Contamination
none
Estimated length
121,907
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found