Clone Read LE_HBa0056D09_SP6_44320

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0056D09_SP6_44320
Primer
SP6
ID from Seq. Facility
LE_HBa_056_D09-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
12 trimmed for vector and quality, 917 raw
Sequence
>LE_HBa0056D09_SP6_44320 (raw untrimmed)
GCGTGGGTTATTCACGACATCTGTACCCATGCCTTTTTGGGCTATCTTCCCCTTTGGCCTCGTATCGATCGTTATCGATCATCCCTATATGCAAAGTTGC
GTGCACTCACACTTCCCATTTGTTGAGACGGAGGATGAAGATCAACAAACTGGGTTGAACTCACCATTTCTGATGCTGATTGATTGGTATAGGAATGTGT
CGTGTTCCTGAGACTAGTAGTGGCGACAGCATTGCTCTCTTCAGACTTATTATAGCCCGAACTATCCGAGTCTTGATCTCCCACCTTTCGTTTGTGGTGG
CTCTTCCCTTGCAACCGCGA
GTTTTTGCCCCAATAGTTCTTTGCTTCTCGCCTAGTGATTATTCTTCTCCTCTCCATGAAGACTCTATCCCGGTCCGTCG
CGCAACTTTGCACTCCTTGTGTTCCCCCTGATCTTGTGAGACTAACCTGCTTCTTCCCCTCTTTTTCCTAAAAACGGACGATGATCAAGACCATGGCATG
TGTGCCGAGTCTGACAAGGGCTCAAACAACACATTCGATCGTTCCACTTTCCGCCCATGGTCTTCCACCCCCGAGGTGCACTTCTCCTACATCCTCCCAG
GAGTGCTTTTTCCTCTTCCTCCGGTTCTCCAATACGTAGATGAGGGTTGCACTTTTAAAATTTCCTGGTCGACCTAGTTCCCTTTGGGGAAAATCACTTT
CGCCATCGCTCATCGCCAATTATAATCCTTCCTTCCTATACCCTCCTTCCCTTACCATCTTTTCGCACTGTTCCCCGAAACCCCATTTTTTGGGAACACT
CCGATCCATTCCTTCTACACACACTTTCAACCTTAACTCCGTTGTCTTTAATCAAATCCACATTTTCTAGTCCCCTTCCAGAACATAGCGACTTTTCTTC
CCCATCCAGCGGGTAAA
>LE_HBa0056D09_SP6_44320 (trimmed for quality and cloning vector)
GTTTTTGCCCCA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.495824
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0056D09
Clone
Clone name
hba-56d9
LE_HBa0056D09
P056D09
Clone type
BAC
Contamination
none
Estimated length
119,304
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found