Clone Read LE_HBa0056M19_T7_44773

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0056M19_T7_44773
Primer
T7
ID from Seq. Facility
LE_HBa_056_M19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
472 trimmed for vector and quality, 888 raw
Sequence
>LE_HBa0056M19_T7_44773 (raw untrimmed)
TTATCTATATCTTCCTTTTTCTTATGTTTCTTCTTTATTTCATCTGACAGGAATGTAATCTTGGGAATACTCTGAAAAACATTTTCCGATGTGCCTTAAT
GGAATTAAGATCATCTCTAGAAAACAATACCTAATCATCTGCAAAACACAAATGAATGATATCCAGCTTAGAGCACTTAGGATGGTACTTGAAGTTCTTC
TCTTCTTTAAGTCCTTTGAACAACCTACTGAAGTACTCCATAGCTATAGAAAAAAGGAAAGGTGACATTGTATCTCCTTGCCTGAGCCCTTTAGCTGCAT
CAAACCTTTGAGTATTCTAACCATTGACTACAATAGTGTAATTCACTGTTTTAACACACTGCATTACCCATTGAGTAAATAATTCAGGAAAACCCAAGCC
TACCACCACTTTCTCTAAGAAAGGACATTCTACTGAATCATATGCTTTTTGTAGGTCAATCTTAAGCATACTTCTAGGAGATACATTCTTCCTAGTATAA
GCCTTTACCAATTCATAAGCTAGAATTATGTTGTCTCCAATTTTCCTCCCTGGAATGAATCCTGCTTGACTATCACCGATAACAGTGTGAATAACTTCAT
GTAATCTGTGAGTTTTCAATTTTGAAATGATTTTATACAGGACAGTATAACTAATCTATAGGCCTATATTCTTTCACATTCTTTGGACTATGTACCTTTG
GTATTAGAGAACCCAGGGGTGCTGTTTAAAAGGCTTTAAAAACATTCCCCGGTGGTGAAAAAAACTCTTAGACCGCATTTACGAACATTCTTTACCAATA
AATCTTTCCCTGTTTATCCTTAAATAAAAAGAGCAATTGGAACCTCCCCTTTACCCTGGCAGCCCTTTTCCTTTCCCCCACACTAAAT
>LE_HBa0056M19_T7_44773 (trimmed for quality and cloning vector)
ATCATCTGCAAAACACAAATGAATGATATCCAGCTTAGAGCACTTAGGATGGTACTTGAAGTTCTTCTCTTCTTTAAGTCCTTTGAACAACCTACTGAAG
TACTCCATAGCTATAGAAAAAAGGAAAGGTGACATTGTATCTCCTTGCCTGAGCCCTTTAGCTGCATCAAACCTTTGAGTATTCTAACCATTGACTACAA
TAGTGTAATTCACTGTTTTAACACACTGCATTACCCATTGAGTAAATAATTCAGGAAAACCCAAGCCTACCACCACTTTCTCTAAGAAAGGACATTCTAC
TGAATCATATGCTTTTTGTAGGTCAATCTTAAGCATACTTCTAGGAGATACATTCTTCCTAGTATAAGCCTTTACCAATTCATAAGCTAGAATTATGTTG
TCTCCAATTTTCCTCCCTGGAATGAATCCTGCTTGACTATCACCGATAACAGTGTGAATAACTTCATGTAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949694
Expected error %
0.278731
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAA97290.1| Score 154 E Value 8e-37 Identity 15.70% Align. Length 470bp (99.58%) Frame 2
non-LTR retroelement reverse transcriptase-like [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC28221.1| Score 153 E Value 2e-36 Identity 15.30% Align. Length 470bp (99.58%) Frame 2
similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana] pir||T01871 RNA-directed DNA polymerase homolog T24M8.8 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0056M19
Clone
Clone name
hba-56m19
LE_HBa0056M19
P056M19
Clone type
BAC
Contamination
none
Estimated length
108,952
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found