Clone Read LE_HBa0056O07_T7_44845

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0056O07_T7_44845
Primer
T7
ID from Seq. Facility
LE_HBa_056_O07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
641 trimmed for vector and quality, 879 raw
Sequence
>LE_HBa0056O07_T7_44845 (raw untrimmed)
TTGGCCCCCGGGGGCACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTCTCTCTTTTCTGGATCAACATGAACATAAGCAATGCAGCCAAAAGTCCTA
AAGTGTGAGTACTTGAGTTCTTTTCCTGTTCACACCTCCTCTGGAATCTTGAACCCTAAAGGAACTGATGGTCCCCTGTTGATCAAGTATGCAGTTGTGC
TCACAGCATCCACCCAAAGTGTTTTGGGCAGCCCACAGTGTATCCTCATACTCCTTGCATGCTCATTCAATGTTGTATTCATCCTCTCAGCAATTCCATT
CTGCCTTACCTTACCAGGAACTGTTCTCATCAATCTGATTCCTCAGCTGCACAGAATGCCTTGAACTCTGATTTGTCATACTCTTCTCCATTGTCAGACC
GTAGGCATTTGACTTTCAAACCGATCTAATTCTCAACTTCAGCTTTCCACTTTTTGAAAGTTGCAAACACATCTGACTTATGCTTCAAGAAGTAAACCCA
TACCTTCCTGCTGAAATCATCAATGAAGGTAACATAGAATCTGGATCCTCTAAGTGATGATACTGGAGATGGTCCCCAAACATCTGTATGGAACATTTCC
AACCCGCACTTTCTTTGGCTCTCTAGGAGTTCTTTGAGAATTTTATTCTTTTCTGTTTGCCCCATAACACAACTCTCCGCAAAGACCTATAACATACAAA
CTTCAACCCTCTAATGCTTCTTTTTGAACCAACATCTTTCATTTCCTTTAGCACTCATGTGTCCCAAAATCCGGTTGGTGCCCCCAACTTTAAACCTGGA
AACCACCTTTTCATCTAACAACCCGCCTTGTTTTATAAACCCCCCTAACCATGGGGGTGGTTACAAGGGATCTCCCAAA
>LE_HBa0056O07_T7_44845 (trimmed for quality and cloning vector)
AGCTTGTCTCTCTTTTCTGGATCAACATGAACATAAGCAATGCAGCCAAAAGTCCTAAAGTGTGAGTACTTGAGTTCTTTTCCTGTTCACACCTCCTCTG
GAATCTTGAACCCTAAAGGAACTGATGGTCCCCTGTTGATCAAGTATGCAGTTGTGCTCACAGCATCCACCCAAAGTGTTTTGGGCAGCCCACAGTGTAT
CCTCATACTCCTTGCATGCTCATTCAATGTTGTATTCATCCTCTCAGCAATTCCATTCTGCCTTACCTTACCAGGAACTGTTCTCATCAATCTGATTCCT
CAGCTGCACAGAATGCCTTGAACTCTGATTTGTCATACTCTTCTCCATTGTCAGACCGTAGGCATTTGACTTTCAAACCGATCTAATTCTCAACTTCAGC
TTTCCACTTTTTGAAAGTTGCAAACACATCTGACTTATGCTTCAAGAAGTAAACCCATACCTTCCTGCTGAAATCATCAATGAAGGTAACATAGAATCTG
GATCCTCTAAGTGATGATACTGGAGATGGTCCCCAAACATCTGTATGGAACATTTCCAACCCGCACTTTCTTTGGCTCTCTAGGAGTTCTTTGAGAATTT
TATTCTTTTCTGTTTGCCCCATAACACAACTCTCCGCAAAG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.947892
Expected error %
0.95807
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK29467.1| Score 114 E Value 8e-45 Identity 57.60% Align. Length 574bp (89.55%) Frame 1
polyprotein-like [Lycopersicon chilense]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 114 E Value 1e-46 Identity 56.60% Align. Length 574bp (89.55%) Frame 1
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0056O07
Clone
Clone name
hba-56o7
LE_HBa0056O07
C01HBa0056O07
P056O07
Clone type
BAC
Contamination
none
Estimated length
88,899
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found