Notice: the solgenomics has been unstable, we apologize for the inconvenience.

Clone Read LE_HBa0057O20_T7_45639

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0057O20_T7_45639
Primer
T7
ID from Seq. Facility
LE_HBa_057_O20-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
778 trimmed for vector and quality, 860 raw
Sequence
>LE_HBa0057O20_T7_45639 (raw untrimmed)
CCGGAACCGGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGCTCTGCTCTTTCTTCTCTTGCCACAGACGTTTCTGTGGCAATGCAGTTAATG
AAATCAGATATTATGCAACCCATAGAAAGAGTACTAAAATCTGCTGGTCCTGAGGAAGTCATATCTGTGTTGCAAGTTTTGGGAAATTTGGCCTTTGCAT
CAGATATTGTATCCCAAAAGCTGCTGACAAAGGATGTACTGAGATCATTGAAACTTTTGTGTGCTCACAGAAATCCAGAGGCAAGCCTCTCTTGTTCTCT
TTTTTTGTTTGGGAAATTCAATCAGTAAAATGTTTTCCTGTTTCCGTTGAGTGGTCTTTGAAATGAATTATTTTGTCTACTTAGGTGCAAAGACTAGCTT
TATTTGCAGTTGGTAATTTAGCGTTCTGCTTGGAAAATCGTCGTATTTTAGTTACTTCAGAAAGTTTACGCGAATTGCTATTGCGGTTGACAGTTGCATC
AGAGCAACAAGTCAGTAAGGCTGCAGCTCGTGCTTTGGCAATACTAGGTTGGTTTCTGTATGTTCTTATGGTTCAGCTATACCTGGCCTTTTGAATACAT
ATTCTATCTGATTGCAGGGGAGAATGAGGTTCTACGGCGAGCTATAAGAGGGAGACAGGTCCCAAAGCAAGGATTGCGCATACTTTCAATGGATGGTGGT
GGCATGAAAGGTCTGGCAACTGTGAGAATCCTTAAGGAGATCGAGAAAGGTACTGGGAAGCAGATACACGAACTTTTTGACCTCATTTGTGGGACTTCAC
CTGGTGGTATGCTTGCTGTTGCTCCTTGGGATCCAACTGAATGTCTTTTGGAAAAAATGT
>LE_HBa0057O20_T7_45639 (trimmed for quality and cloning vector)
AGCTTGCTCTGCTCTTTCTTCTCTTGCCACAGACGTTTCTGTGGCAATGCAGTTAATGAAATCAGATATTATGCAACCCATAGAAAGAGTACTAAAATCT
GCTGGTCCTGAGGAAGTCATATCTGTGTTGCAAGTTTTGGGAAATTTGGCCTTTGCATCAGATATTGTATCCCAAAAGCTGCTGACAAAGGATGTACTGA
GATCATTGAAACTTTTGTGTGCTCACAGAAATCCAGAGGCAAGCCTCTCTTGTTCTCTTTTTTTGTTTGGGAAATTCAATCAGTAAAATGTTTTCCTGTT
TCCGTTGAGTGGTCTTTGAAATGAATTATTTTGTCTACTTAGGTGCAAAGACTAGCTTTATTTGCAGTTGGTAATTTAGCGTTCTGCTTGGAAAATCGTC
GTATTTTAGTTACTTCAGAAAGTTTACGCGAATTGCTATTGCGGTTGACAGTTGCATCAGAGCAACAAGTCAGTAAGGCTGCAGCTCGTGCTTTGGCAAT
ACTAGGTTGGTTTCTGTATGTTCTTATGGTTCAGCTATACCTGGCCTTTTGAATACATATTCTATCTGATTGCAGGGGAGAATGAGGTTCTACGGCGAGC
TATAAGAGGGAGACAGGTCCCAAAGCAAGGATTGCGCATACTTTCAATGGATGGTGGTGGCATGAAAGGTCTGGCAACTGTGAGAATCCTTAAGGAGATC
GAGAAAGGTACTGGGAAGCAGATACACGAACTTTTTGACCTCATTTGTGGGACTTCACCTGGTGGTATGCTTGCTGTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.973845
Expected error %
0.405638
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g61850.1 Score 125 E Value 1e-67 Identity 79.20% Align. Length 776bp (99.74%) Frame 3
68414.m06979 patatin family protein similar to membrane-associated calcium-independent phospholipase A2 gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains Patatin domain PF01734, PF00514: Armadillo/beta-catenin-like repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_176378.1| Score 125 E Value 7e-66 Identity 79.20% Align. Length 776bp (99.74%) Frame 3
patatin family protein [Arabidopsis thaliana] gb|AAC28504.1| Contains similarity to gb|U51898 Ca2+-independent phospholipase A2 from Rattus norvegicus. [Arabidopsis thaliana] pir||T02131 hypothetical protein F8K4.6 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD30421.1| Score 117 E Value 9e-37 Identity 73.70% Align. Length 776bp (99.74%) Frame 3
putative calcium-independent phospholipase A2 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0057O20
Clone
Clone name
hba-57o20
LE_HBa0057O20
P057O20
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found