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Clone Read LE_HBa0058N11_SP6_46340

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0058N11_SP6_46340
Primer
SP6
ID from Seq. Facility
LE_HBa_058_N11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
687 trimmed for vector and quality, 877 raw
Sequence
>LE_HBa0058N11_SP6_46340 (raw untrimmed)
AAAAGGGTTCTCCCCCTACTATGTAGAANGNNNANNNNAANAAAANTCNCCACATTCAACTTTNTATCTAACTTGTCCCTCTCAACCCGTGGAATACGAG
AGAAACAAAAATAGCCAAACATTATTATGTTTTTTAAGGACGTCTTATACCTGTGCCATGCCTCAAAAGTTGTCTTTTCCTTCACAGCTATTGTAGGAAA
CCTGTTCAACAAAAAAATAGTAGTGTTAGCTGCTTCTGCATAGGTCCTTCTTATACAATAAGCCTCTCAACATCTCCATTATCAATCTGTTCTTCCATTA
ACTGACACCATTTTGCTGTGGAGTATATGGAAAAGTGATTTGAGGCTTAATTCATACATTTTCACAAAAAAAATCAAAGTCGATCAGATATGTACTCGGT
AGCATCACCTGATCTAAACATTTGAATCCTGGAACCACTTTGAATTTCTACCAAAGCTTTGAATTTCAAGGACACTTCAGGTACTTCAGGTTTGAACTTG
AGAAAATAAATTCAACACAATTGTGTCATATCATCAAAGATGGGGTTAGGAAATTTGAAATTTCTTTTGGGTTTTTGTTTTTGATGTATTATTTTTTTTA
ACTATGTAATAACCTAAGATATCAGGATGCCTTTTTATTTTTTGTTTCTCCTGTTCTCTGCTACTTCCTGTGTCTGTGTTGTATGACATTCTGCTTTGGT
TTACTTCCTACTTTCTCTAGTTTTTTTATGCATGTGCTCGATTTTTTTAGAAATTCTATGTTTATATTCTGATTAATGGTGGCGTATGCTTTTGCCCATT
TTTCAAAAATTTATTCCCCTCTAATAGTTAAGGTGGCTTCCTTTAAAATTGGTTATTATGGGACATTTTTGAATTTT
>LE_HBa0058N11_SP6_46340 (trimmed for quality and cloning vector)
CACATTCAACTTTNTATCTAACTTGTCCCTCTCAACCCGTGGAATACGAGAGAAACAAAAATAGCCAAACATTATTATGTTTTTTAAGGACGTCTTATAC
CTGTGCCATGCCTCAAAAGTTGTCTTTTCCTTCACAGCTATTGTAGGAAACCTGTTCAACAAAAAAATAGTAGTGTTAGCTGCTTCTGCATAGGTCCTTC
TTATACAATAAGCCTCTCAACATCTCCATTATCAATCTGTTCTTCCATTAACTGACACCATTTTGCTGTGGAGTATATGGAAAAGTGATTTGAGGCTTAA
TTCATACATTTTCACAAAAAAAATCAAAGTCGATCAGATATGTACTCGGTAGCATCACCTGATCTAAACATTTGAATCCTGGAACCACTTTGAATTTCTA
CCAAAGCTTTGAATTTCAAGGACACTTCAGGTACTTCAGGTTTGAACTTGAGAAAATAAATTCAACACAATTGTGTCATATCATCAAAGATGGGGTTAGG
AAATTTGAAATTTCTTTTGGGTTTTTGTTTTTGATGTATTATTTTTTTTAACTATGTAATAACCTAAGATATCAGGATGCCTTTTTATTTTTTGTTTCTC
CTGTTCTCTGCTACTTCCTGTGTCTGTGTTGTATGACATTCTGCTTTGGTTTACTTCCTACTTTCTCTAGTTTTTTTATGCATGTGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946583
Expected error %
0.479073
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38786.1| Score 67 E Value 2e-26 Identity 50.80% Align. Length 475bp (69.14%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38797.1| Score 63 E Value 6e-26 Identity 46.70% Align. Length 475bp (69.14%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0058N11
Clone
Clone name
hba-58n11
LE_HBa0058N11
P058N11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found