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Clone Read LE_HBa0061L05_SP6_47768

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0061L05_SP6_47768
Primer
SP6
ID from Seq. Facility
LE_HBa_061_L05-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
680 trimmed for vector and quality, 891 raw
Sequence
>LE_HBa0061L05_SP6_47768 (raw untrimmed)
CCTTTTCCACCTTGGCTTTCCTAGATGTGCACTATTTATCGCTTTAATCCAGGTGAAGTTACTTTACAATGTTGCCTGAGGTGAAACATTATAAGCTAAA
GATTGGTTCTTTCCTTTTGGGAAACCTTATTTCCCTAATTTTTTTCCTGAACTTTTGGCATTTCATAAACAATTCAATTTTTAGGTATCAGCCCGAATTA
AAGAAAATGAATTAGGAGTATGATCTAGTCTTTCACTGCGGTGATATTGAGTTATAATTTTCTTCACATTGTTAACATGCTTTCTACATATCTGGGATGC
AGTTGATGAGCGATGTGATATGGAGCTAGATGAGACAGACCCTGCTGTCTGGTCAAAGTTAGAGGCTGCAACGGATGATTACATTCAGAACACTTCTGCT
GCTTTCAAGAATATTTGTGAAAGATTGTTGGAGAGGCCACATGATGAGAAATTTTCAGACAAAAAGTCCCATCAGTTTCTCAAAGCGAAGAACTCTAAAA
CTGGTGTGTGAGGAATCATTTTTAATTTCTTGCCATGACATTCTTTTGTCTCAGATGGATTGAACTTTATTGGATTCAATTTATTTTCAGATGAAAGCAG
TCCTTCTTTAGGTTGGAGGAGGAGCGTGCTTCTTGTCGAGGCCCCCAAATAGTGCAGATGCTGGAAGAGTCTTTCACCATGTTCGCTCACTAGAGTCATT
GTGTGCTCGTAATGGAATAAAACTCAGTCTTTTCAATGGCATATCAAATACTCAGAAAAGCACTCCAGGATCAACTTTTCCGACCCCATTTGCTTCCCCA
TTGTTCACTGGGAAGTTTCCCTTCAACCCTTCTCTAAACCGTCCTGAAAATGGGGGCTCAAGGGTCGGTAGAATTGATTAATTCCCCCCCC
>LE_HBa0061L05_SP6_47768 (trimmed for quality and cloning vector)
TGTGCACTATTTATCGCTTTAATCCAGGTGAAGTTACTTTACAATGTTGCCTGAGGTGAAACATTATAAGCTAAAGATTGGTTCTTTCCTTTTGGGAAAC
CTTATTTCCCTAATTTTTTTCCTGAACTTTTGGCATTTCATAAACAATTCAATTTTTAGGTATCAGCCCGAATTAAAGAAAATGAATTAGGAGTATGATC
TAGTCTTTCACTGCGGTGATATTGAGTTATAATTTTCTTCACATTGTTAACATGCTTTCTACATATCTGGGATGCAGTTGATGAGCGATGTGATATGGAG
CTAGATGAGACAGACCCTGCTGTCTGGTCAAAGTTAGAGGCTGCAACGGATGATTACATTCAGAACACTTCTGCTGCTTTCAAGAATATTTGTGAAAGAT
TGTTGGAGAGGCCACATGATGAGAAATTTTCAGACAAAAAGTCCCATCAGTTTCTCAAAGCGAAGAACTCTAAAACTGGTGTGTGAGGAATCATTTTTAA
TTTCTTGCCATGACATTCTTTTGTCTCAGATGGATTGAACTTTATTGGATTCAATTTATTTTCAGATGAAAGCAGTCCTTCTTTAGGTTGGAGGAGGAGC
GTGCTTCTTGTCGAGGCCCCCAAATAGTGCAGATGCTGGAAGAGTCTTTCACCATGTTCGCTCACTAGAGTCATTGTGTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956047
Expected error %
0.201566
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g61850.1 Score 89 E Value 7e-21 Identity 43.60% Align. Length 411bp (60.44%) Frame 2
68414.m06979 patatin family protein similar to membrane-associated calcium-independent phospholipase A2 gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains Patatin domain PF01734, PF00514: Armadillo/beta-catenin-like repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAD30421.1| Score 92 E Value 2e-18 Identity 47.00% Align. Length 411bp (60.44%) Frame 2
putative calcium-independent phospholipase A2 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_176378.1| Score 89 E Value 3e-19 Identity 43.60% Align. Length 411bp (60.44%) Frame 2
patatin family protein [Arabidopsis thaliana] gb|AAC28504.1| Contains similarity to gb|U51898 Ca2+-independent phospholipase A2 from Rattus norvegicus. [Arabidopsis thaliana] pir||T02131 hypothetical protein F8K4.6 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0061L05
Clone
Clone name
hba-61l5
LE_HBa0061L05
P061L05
Clone type
BAC
Contamination
none
Estimated length
230,252
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found