Clone Read LE_HBa0063D08_T7_48159

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0063D08_T7_48159
Primer
T7
ID from Seq. Facility
LE_HBa_063_D08-T7
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1157 raw
Sequence
>LE_HBa0063D08_T7_48159 (raw untrimmed)
GGAGATATGATATCAGACATCTAAAAGAATTTGATGTTGAACTCTCCCTCGACTATATGTAGAGGTGGGATTAAGAGAGTGATATTAGATGTGTTGTAGA
GACNTGATAAGTGGGAGAACGAGTTGAGATGAGATNCTAGATGTAGTTGTGTCATGCGTGAACGANTGNCGGTGAGCGATCGGCTGAGAACAGGGCTGAC
GCATGAAGATGTTACATGTTCAGTGGAAGAGTGATATGCGGCACAGCACAGGTAGATGAGTTTTAGTNTGNGATAGACACATCAGTTAGACGATCTATAT
AGTGCATGTATGCGCATGTCGTGGAGATACNGTATGCGTGTACTACTATGCNAGTGTGGTGACGTNTAGAAGCAGGTATAGCATACATAGTTACACATAT
ATGCGTATCTGATAATAAATATATTACACGTATCACGTAGGGAGGATCGAGTCGCAGCACATGCGTGGTATCTGAGCGCGCGACGAGTAGACGCGTAGAT
AGNACTTCGTTGCTGAAGCTATATGATTTGGTGGAGCTGATGTATGGCACATCGTCGTTCGACTGACATGCAAGTAGATATACATATCCATCTTCTTGCT
ACCGATCTCTAGAGTCGCTATCTAACATCCGCCTGCTAGATGATGGAGATTTGGCGCTACGCTGCAGTANAGGAAGAGCTACGCGTGAGATGTGATATGA
TTCATGACTCGATACTAGTATTAGTCNACAAGACGCCTGTGTAAGTCTATATGTCTCGNGTCTTGCTATTATTATTTAGATCTATGTCTGTTACGTATGT
GTTCTCTAATACACTCNATNAGCCGATCATTCATATCTCTGTGATGTATTCAATATGGATGCGCAACCATNCCATCGTACCTCTGCCTCTGATCCTGCGT
TATCTCGCAACACTCACACTACGACTCGCGACCGTTAGCACTAGTTCATATCGTTATTCTTTTGTTCTNTCTCTGTTTGTATTAGGATATCTTATTCATC
CGTTTATTCCTTCTTAACTCTGCGTACTCGTGTTATGCGTTGCTACTATTTCTATGCGTCTCGTCTCTCTCTGATTGTCTCCATTCGCTTTTCACGTGCG
AAGTACTATGAGANGTGCTCTTATGATNTATAAAGTAAGTGTTGAATCTTTCATCTN
>LE_HBa0063D08_T7_48159 (trimmed for quality and cloning vector)
G

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0063D08
Clone
Clone name
hba-63d8
LE_HBa0063D08
C12HBa0063D08
P063D08
Clone type
BAC
Contamination
none
Estimated length
107,321
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found