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Clone Read LE_HBa0063N19_T7_48661

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0063N19_T7_48661
Primer
T7
ID from Seq. Facility
LE_HBa_063_N19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
744 trimmed for vector and quality, 894 raw
Sequence
>LE_HBa0063N19_T7_48661 (raw untrimmed)
CCCAACCTCGGTACCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGATACGTTATCACTTGTTTTATCCTCCCATGTATTCCGAGTGAATTG
GTTGAGGTTATTTTTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCGTCTCCTTTGTGGACGTAGGTCGATTGACCGAACTACGTTAAATCT
TTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCATGATCTTTTGAGGTTTACTTTGCTAGCTTCCGCGTTTACACCTGCTTATTTTCGGTCCTAA
CAATGTGTTACATACAAACTTCAAAAGAAACCATTTATTTCATGAAAATTGGATACAACAATAATTAAAAGGGGCAATTACTAGCCTCCATTCCAACCAA
ATAGAGTAAAAAATACACTTCTTTTAAAATAAGCAACTAGTAGTACTACAAGCATACAAATAACAAAATACCAAACACAGAAAGAAACTAATTTTGTCTT
AAGCACATTGGAAGTTCTTGGGTGCATATTTGCCACAATTGTTGAGCAACAAGCTAAGGGAAAGTGGAACATTTAGATTAATTCCCAACACATTGGCTTT
AAGGGCAGTGCAAAGGCAGACAGCAGCATCAAGGTCAACAAGTCCTTCAATTAAAGAGCAACATTGAGTCTTGGCTGGACTACTTCCAACAACAAGGTGC
AATAAATCACCCAATAAATTGGCACAAGCATTTAGTTTTAGTGTGTCCTTTGGGCACTTACCCTTTGATGATGGGGTGGAGGGGGTAGGGGTAGGGTNGN
GGGGNNNNGGGNGNGGGGGNGGGGGNNNGGGGGGGNNGNGGGNNGGNGGNNGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
>LE_HBa0063N19_T7_48661 (trimmed for quality and cloning vector)
AGCTTGATACGTTATCACTTGTTTTATCCTCCCATGTATTCCGAGTGAATTGGTTGAGGTTATTTTTCTCTGTATTTTGTACTCTCATATTTATAGTGGA
TTGCTCGTCTCCTTTGTGGACGTAGGTCGATTGACCGAACTACGTTAAATCTTTGTGTCTTTTGGTATATTTCTCGTTGTCTTCTTACTCATGATCTTTT
GAGGTTTACTTTGCTAGCTTCCGCGTTTACACCTGCTTATTTTCGGTCCTAACAATGTGTTACATACAAACTTCAAAAGAAACCATTTATTTCATGAAAA
TTGGATACAACAATAATTAAAAGGGGCAATTACTAGCCTCCATTCCAACCAAATAGAGTAAAAAATACACTTCTTTTAAAATAAGCAACTAGTAGTACTA
CAAGCATACAAATAACAAAATACCAAACACAGAAAGAAACTAATTTTGTCTTAAGCACATTGGAAGTTCTTGGGTGCATATTTGCCACAATTGTTGAGCA
ACAAGCTAAGGGAAAGTGGAACATTTAGATTAATTCCCAACACATTGGCTTTAAGGGCAGTGCAAAGGCAGACAGCAGCATCAAGGTCAACAAGTCCTTC
AATTAAAGAGCAACATTGAGTCTTGGCTGGACTACTTCCAACAACAAGGTGCAATAAATCACCCAATAAATTGGCACAAGCATTTAGTTTTAGTGTGTCC
TTTGGGCACTTACCCTTTGATGATGGGGTGGAGGGGGTAGGGGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963444
Expected error %
0.169212
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g12090.1 Score 106 E Value 1e-23 Identity 18.20% Align. Length 284bp (38.17%) Frame 2
68414.m01399 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g12520.1 Score 104 E Value 4e-23 Identity 18.60% Align. Length 290bp (38.98%) Frame 2
68417.m01977 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB16428.1| Score 142 E Value 9e-33 Identity 23.90% Align. Length 284bp (38.17%) Frame 2
P-rich protein EIG-I30 [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAS80139.1| Score 119 E Value 1e-25 Identity 21.10% Align. Length 284bp (38.17%) Frame 2
arachidonic acid-induced DEA1 [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0063N19
Clone
Clone name
hba-63n19
LE_HBa0063N19
C08HBa0063N19
P063N19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found