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Clone Read LE_HBa0064M09_SP6_49360

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0064M09_SP6_49360
Primer
SP6
ID from Seq. Facility
LE_HBa_064_M09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
714 trimmed for vector and quality, 832 raw
Sequence
>LE_HBa0064M09_SP6_49360 (raw untrimmed)
GGAGGAGGAACGTCGTNCATTATANCAAAACCAAATATGCCCACTCGCGTCTGTAATGGTGGTGAATGAATTGCTGAAAAACATGGGTTTGAGCAGGGTA
AAGGCTTAGGAATCTGCTTGCAAGGAAGAGCTTATCTTGTGAGTCTACGAAAGAGCATCTGTACTTTTTGCTTAGGCTACCAACCTAGAGTCGAGGACAA
AATGAAGGCAAATAAGCATAAGAGAGATGTATGGTCACTTACCAAGCCTATACAACCAATCTACAAATCTTTCATCAAAGCCCGCGCAACAGAATCTTAT
CAATCATCTTTTCCAGAGCCAGTGATGAAAGTTAGCGAAGAAATGATCAACTATTTTCAAGATTTATTTGTCGAGGTTGATATGGTGGAACTCGGAGAAG
GCACTAGCGACAGAGATGTGCAATTCATTGTTCCTGATGTCAATCTAAACAATTGGGAGGTCACCCCTCTCCCTGTTAAAGATGAGTCTTGGTAGTCTGT
CTTGTTTTTTCTTTTGTCATCCGATTCATTCAAGGATTGTAATTCGGATTTTTTTTCTTGCTGTTTTATTTCAAATATTCTATTTCCTTTTTCAATAGGA
TGTAATTGCATCTTTATTTCAGTCTAATATATTTGTTCGTTTTCTTTTATACAGTTCTTTCTATGCCGATTCTAGTGATATGACATGCATGCAGAATTTT
TCGCCAGATCTTAATATCCAATCTAATCTTCAACCTAATATTGAAATAATAAGTCGAGAAATCGAATATGATGAAGACAGAGTATTTTGAAGAAGTAAAG
AGGGGATTTCATTATTTTTGAAAATAAATCAA
>LE_HBa0064M09_SP6_49360 (trimmed for quality and cloning vector)
AAACCAAATATGCCCACTCGCGTCTGTAATGGTGGTGAATGAATTGCTGAAAAACATGGGTTTGAGCAGGGTAAAGGCTTAGGAATCTGCTTGCAAGGAA
GAGCTTATCTTGTGAGTCTACGAAAGAGCATCTGTACTTTTTGCTTAGGCTACCAACCTAGAGTCGAGGACAAAATGAAGGCAAATAAGCATAAGAGAGA
TGTATGGTCACTTACCAAGCCTATACAACCAATCTACAAATCTTTCATCAAAGCCCGCGCAACAGAATCTTATCAATCATCTTTTCCAGAGCCAGTGATG
AAAGTTAGCGAAGAAATGATCAACTATTTTCAAGATTTATTTGTCGAGGTTGATATGGTGGAACTCGGAGAAGGCACTAGCGACAGAGATGTGCAATTCA
TTGTTCCTGATGTCAATCTAAACAATTGGGAGGTCACCCCTCTCCCTGTTAAAGATGAGTCTTGGTAGTCTGTCTTGTTTTTTCTTTTGTCATCCGATTC
ATTCAAGGATTGTAATTCGGATTTTTTTTCTTGCTGTTTTATTTCAAATATTCTATTTCCTTTTTCAATAGGATGTAATTGCATCTTTATTTCAGTCTAA
TATATTTGTTCGTTTTCTTTTATACAGTTCTTTCTATGCCGATTCTAGTGATATGACATGCATGCAGAATTTTTCGCCAGATCTTAATATCCAATCTAAT
CTTCAACCTAATAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95983
Expected error %
0.144091
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 212 E Value 7e-55 Identity 76.50% Align. Length 445bp (62.32%) Frame 3
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 179 E Value 4e-45 Identity 68.40% Align. Length 445bp (62.32%) Frame 3
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0064M09
Clone
Clone name
hba-64m9
LE_HBa0064M09
C07HBa0064M09
P064M09
Clone type
BAC
Contamination
none
Estimated length
129,235
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found