Clone Read LE_HBa0065D01_SP6_49680

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0065D01_SP6_49680
Primer
SP6
ID from Seq. Facility
LE_HBa_065_D01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
546 trimmed for vector and quality, 907 raw
Sequence
>LE_HBa0065D01_SP6_49680 (raw untrimmed)
AAAAAAAAAGGCCCTCCCCCAACTAGTGTATTTTATACTTGTGTTACCTCCCATGTATTCCGAGTGAATTGGGTGAGGTTGTTTCTCTCTGTATTTTGTA
CTCTCATATCTATAGTGGATTGCTCACCTCCTTTGTGGACGTAGGCCGGTTCACCGAACCACGTTAAATCTTTGTGTCTTTTGGTATATTTCTTGTTGTT
TCTTACTTGTGGTCTTTCTAGGTTTGTTTTGCTAGCTTCCGCATTACTCCTGCTTATTTCGATCCTAACAGTTTGAGGGGGTGGGGGTGTAAGAAGAANA
ACGTTTATTACTCTCACCATCCTAATTTATTCNACACCCTTTGACTTGGCAAAAAGTTTAAGAAAAAAACGAAGATTTTAAAAATTGTGGTCCAAAACTC
ATTGATCATTTATATTTTTATGGATTATTTTATTAAGTGTAAAAAATTAATTCAAGAGTTAAATAATCTTCGATTAAAAAAAGTATGACATTATTTTTTA
GACAAACTGAAAAGAAAAACATGTCATATCAATTGAGATAAGCGTTTGCGAACCCTCCGGTGCATAAAAAGACTTTTGTGTTTATTTTTAATTGAATACG
TATTAGATATATCATATTTTTAAAAACCAAAAGGATATGACTTCTTTCGATTAAATTGAGAAAATATTATGTTTTTTAAAGCTAAATTGATTGGATTCAC
GTTAAAGATATTTTATTCCTGTTCAAGCTTACTCAAACTATCGCACTTTACTCTAATCTCTCCATTAACAAATAATCAGACACCTATATACGTCTTTTAT
TTATCTGAATTTAGATCTTAAACCTGGATGTCGATTTCTTATTTTTTTTCCTCAGGTTGGCGCCATATTCTAACCTTCTTAAAAGCGCTTCATGTATCTC
GCTATCT
>LE_HBa0065D01_SP6_49680 (trimmed for quality and cloning vector)
CTTGTGTTACCTCCCATGTATTCCGAGTGAATTGGGTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATCTATAGTGGATTGCTCACCTCCTTTGTG
GACGTAGGCCGGTTCACCGAACCACGTTAAATCTTTGTGTCTTTTGGTATATTTCTTGTTGTTTCTTACTTGTGGTCTTTCTAGGTTTGTTTTGCTAGCT
TCCGCATTACTCCTGCTTATTTCGATCCTAACAGTTTGAGGGGGTGGGGGTGTAAGAAGAANAACGTTTATTACTCTCACCATCCTAATTTATTCNACAC
CCTTTGACTTGGCAAAAAGTTTAAGAAAAAAACGAAGATTTTAAAAATTGTGGTCCAAAACTCATTGATCATTTATATTTTTATGGATTATTTTATTAAG
TGTAAAAAATTAATTCAAGAGTTAAATAATCTTCGATTAAAAAAAGTATGACATTATTTTTTAGACAAACTGAAAAGAAAAACATGTCATATCAATTGAG
ATAAGCGTTTGCGAACCCTCCGGTGCATAAAAAGACTTTTGTGTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956635
Expected error %
0.871974
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0065D01
Clone
Clone name
hba-65d1
LE_HBa0065D01
C03HBa0065D01
P065D01
Clone type
BAC
Contamination
none
Estimated length
71,796
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found