Clone Read LE_HBa0065N03_SP6_50164

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0065N03_SP6_50164
Primer
SP6
ID from Seq. Facility
LE_HBa_065_N03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
6 trimmed for vector and quality, 1386 raw
Sequence
>LE_HBa0065N03_SP6_50164 (raw untrimmed)
TAATAAAAAATAAAAGCTGTTTCTTCTCCNTCNCAACATACTGGTNANCNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNTNCCNNCTCACTCCTCACCCCNTCGCANCNNANCCNNANCNACNTTCCGGCCTTNTACTCGAG
ATGTCATTCGCTTCTCGCCGAATATCAANTCATATGGTATNGCAGCATGGAGTTGATACTTAGCANTACTCCTATACTAAACAACTCTATTCAATGTGTA
CTGCACGTCTGCGCATGCTTGTCGTGCATACAGTGTAACTCGTAATATGACTCANGCTGTAAGTAGCCTATGTTCGCTACGANTCACCGTAGTGTGCCGC
GCACATATGAAATGGTGCCTCTTACATCAGTGCTATCTAGAGGACGCTTGGCAATAGTGCTCTATTATGCATCTATATAGTGTAGACATCGAATGCGCGA
TGTCATGCTTACTTGTATACATTGTGGAAAAACACTTAGTGTGTACAAGAAGAGAACATATTCTCTAGTTCTGAGAGAGTCTGGCAGAATGGACTTCCTA
CTAACGATAGCATACTCTTGTAGACGTTTCGTTACAGATTATTATGATAGCGCATGCTCAATCTCTGCACTCTTCACGATCTGCTGCAGTCCATAATATC
GATTGTAGCCATCATTGCAACAAACATATAATTAGTCATTATATAATGGCTCACTTGTGACGATCACTCAGTCATGCTCATGCGGTGATGATGATAGATA
GTATGTATATATATGCTAATATCATACGATACAGTGATTCTTTAGTGCGAAGGATTGACAGAGTCGCTATTGTCATGGGATTAAACCTTTTGCGTTTGTC
ATGAAGAGCATGTTATGCTACGCACCAATACAAACTATATTATCGAAAAGTGACGCACTCCATCACCATGTGACGCGAGGTATTAGTTGCCTACTCTCCT
TTCTATGTCAAACTAGTTACTTAGGTAGATTATGCCTTAGTGCATTAATCTAGCTTGCAGTTATCGTAAGACAAATAGGATGCGTCGAACCACGGGAAGG
TAATATTGTATTAACCTTTAATTTACTTATTGTGTTCTAAATATGGGGATGCATTCTTTTGACCAACTCTGCTGTTCACGCTTGATTTTTCTGGGATAAC
TCTCTCTAGTACTCCCATTTGTAGCGTTCATCTACTTTCAGGCTCATTACACACTTTGAATAACATAATCAAATGCTCATCAGTTCGTACCTCCCCCCGC
CCGAAACTATTACTTGCTGTCCTCGTTTCAACATACCCTACTCTACACAACTCTTCCCACATCACCCCTTCTCAAACCTCCCCATN
>LE_HBa0065N03_SP6_50164 (trimmed for quality and cloning vector)
TGCTAT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.216486
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0065N03
Clone
Clone name
hba-65n3
LE_HBa0065N03
P065N03
Clone type
BAC
Contamination
none
Estimated length
123,229
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found