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Clone Read LE_HBa0066M12_SP6_50902

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0066M12_SP6_50902
Primer
SP6
ID from Seq. Facility
LE_HBa_066_M12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
713 trimmed for vector and quality, 907 raw
Sequence
>LE_HBa0066M12_SP6_50902 (raw untrimmed)
CGCGAGGTTTAAGGGACATCCCTTTCTTTGTGCATTCACAATCTTCTACAATCTTTGCTTTACTTCTCTATCGACACTTCTACTTGGCCCCTAGTTTGTG
GGTGATATGCTGTAGCACCTTATTGTTAACCAAATGATTAATGAAATGCTTTCCTCCATCATTAACAGTAGCTCTTGGAGTCCCAAATCTAGTGACTGTG
TTTTTTCATGAACTTTATGACAACCTTTAAAACATTGGTGGGAAAGAGCTACAACTTCAACCAACTTAGGCACAAAATCCACCGTTACTAAAATGTATTG
GTTTCCATTGGATGGTGGAAACGGACCCATGAAGTTAATACCCCTCGTATCAACTATTTCCACCTCAAGATTGTTATTCAGTAGCATCTCATGTCTCTTC
GAAATAGCACCCATCCTCTGACATTGGTCACACTCTTTCACATAGTAAGCTACATCTTCTAACAATGTGGGCCAAAATAATCCTGATTGCAACACCTTGT
GGTCCGTGCGCTCACCTTGATGACAACCTTCATAAGGTGATAAGTGACAACTTTCTTGCACTTGGTTGACCTCATTCTTCGGAATACATCTCCTTACTAC
TTTTTCTGGCCTTTGCTTGAACAATAGCGACTCATCCCATATGTAGATTCTGGCATCATGGTTTAACTTCTTTTTGTTGTGTGGTTGCTACAGGGGTAAG
CACTCTGTTTACCAACAAATTCACTAAATTCTGCATACCAGGACATTTGAGTTGATATTAAGGGCCAACATCTGCTTATGCAAAAACTCCTCCTGGATTT
GTCATCCATTGTGTACTGCGGAGAACCCTCCACCTCAACAAATGGATCTAATTTAGTTTACGGGGCTTTTTTTGTCCCGAATACTAGTTAAAATATTAGA
CCAAAAC
>LE_HBa0066M12_SP6_50902 (trimmed for quality and cloning vector)
TCTTTGTGCATTCACAATCTTCTACAATCTTTGCTTTACTTCTCTATCGACACTTCTACTTGGCCCCTAGTTTGTGGGTGATATGCTGTAGCACCTTATT
GTTAACCAAATGATTAATGAAATGCTTTCCTCCATCATTAACAGTAGCTCTTGGAGTCCCAAATCTAGTGACTGTGTTTTTTCATGAACTTTATGACAAC
CTTTAAAACATTGGTGGGAAAGAGCTACAACTTCAACCAACTTAGGCACAAAATCCACCGTTACTAAAATGTATTGGTTTCCATTGGATGGTGGAAACGG
ACCCATGAAGTTAATACCCCTCGTATCAACTATTTCCACCTCAAGATTGTTATTCAGTAGCATCTCATGTCTCTTCGAAATAGCACCCATCCTCTGACAT
TGGTCACACTCTTTCACATAGTAAGCTACATCTTCTAACAATGTGGGCCAAAATAATCCTGATTGCAACACCTTGTGGTCCGTGCGCTCACCTTGATGAC
AACCTTCATAAGGTGATAAGTGACAACTTTCTTGCACTTGGTTGACCTCATTCTTCGGAATACATCTCCTTACTACTTTTTCTGGCCTTTGCTTGAACAA
TAGCGACTCATCCCATATGTAGATTCTGGCATCATGGTTTAACTTCTTTTTGTTGTGTGGTTGCTACAGGGGTAAGCACTCTGTTTACCAACAAATTCAC
TAAATTCTGCATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962106
Expected error %
0.195636
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF63114.1| Score 145 E Value 4e-37 Identity 50.30% Align. Length 544bp (76.30%) Frame 3
Hypothetical protein [Arabidopsis thaliana] pir||B96502 hypothetical protein F28H19.8 [imported] - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM15254.1| Score 144 E Value 3e-38 Identity 49.00% Align. Length 589bp (82.61%) Frame 3
putative retroelement pol polyprotein [Arabidopsis thaliana] pir||B84505 probable retroelement pol polyprotein [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0066M12
Clone
Clone name
hba-66m12
LE_HBa0066M12
C03HBa0066M12
P066M12
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found