Clone Read LE_HBa0067D12_SP6_51238

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0067D12_SP6_51238
Primer
SP6
ID from Seq. Facility
LE_HBa_067_D12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
693 trimmed for vector and quality, 766 raw
Sequence
>LE_HBa0067D12_SP6_51238 (raw untrimmed)
AAAAAGGTTTNCNNACTCTATTGANNANCNNNNNNCNNNANGGATGTTGATATAAGGGCATCCCTTATCCTATTGGCCCAAGCTGTCATTACACAATCCC
TAGATATGACGGACCAAAATGACCGGGAGGTTATACCACATCCGAATCAACAAGTGATTGCTATTGCCTCCTGTCTAAGGGACTTCACTCGGATGAACCC
TCCTACTTTCTACGGGTCAAAGGTTAAAGAAGACCCCCAAGAGTTCTTCGATGATGTCTACAAGATACTATTGGATATGGGGTTGTCCACAAGTGAGAAG
GCCGAGTTGGCCACTTATCAACTCAAGGACGGGGATCAAGAATGGTTTGTCCAATGGAGAGATAATATGCATTGAGGGGTGGTCCGTTGACTTGGGAGAT
CTTCAAGAAGGATTTTCTTGATTGGTTCTTTCCTAGGGAGATGAGGGAAGCTAAAGTGGTGGTGTTCATCAACCTTCTCCAAGGAGGTATGAGTGTTCAT
GAATACTCCTTGAAATTCACTAAATTGTCGAAATATGCTCCTTCTCTGGTTTTCGACCCTAGAGATGAAATGAGACGCTTTGTAATGGGGGTGTTGGATG
ATTTGCAAGAGGAATGTCATTCATCCATGCTACATGAAAACATGAACAATTCTCGTCTTATGGTGCATGATAAGCATGTGGAAGAGGCAAGGGCTAAGAG
GAAAATTAGATATGCTAAGAGCTCAAGATCTTTTGATGGAGGTTCTTAAAAGAATAGGCTTGAAAT
>LE_HBa0067D12_SP6_51238 (trimmed for quality and cloning vector)
GGATGTTGATATAAGGGCATCCCTTATCCTATTGGCCCAAGCTGTCATTACACAATCCCTAGATATGACGGACCAAAATGACCGGGAGGTTATACCACAT
CCGAATCAACAAGTGATTGCTATTGCCTCCTGTCTAAGGGACTTCACTCGGATGAACCCTCCTACTTTCTACGGGTCAAAGGTTAAAGAAGACCCCCAAG
AGTTCTTCGATGATGTCTACAAGATACTATTGGATATGGGGTTGTCCACAAGTGAGAAGGCCGAGTTGGCCACTTATCAACTCAAGGACGGGGATCAAGA
ATGGTTTGTCCAATGGAGAGATAATATGCATTGAGGGGTGGTCCGTTGACTTGGGAGATCTTCAAGAAGGATTTTCTTGATTGGTTCTTTCCTAGGGAGA
TGAGGGAAGCTAAAGTGGTGGTGTTCATCAACCTTCTCCAAGGAGGTATGAGTGTTCATGAATACTCCTTGAAATTCACTAAATTGTCGAAATATGCTCC
TTCTCTGGTTTTCGACCCTAGAGATGAAATGAGACGCTTTGTAATGGGGGTGTTGGATGATTTGCAAGAGGAATGTCATTCATCCATGCTACATGAAAAC
ATGAACAATTCTCGTCTTATGGTGCATGATAAGCATGTGGAAGAGGCAAGGGCTAAGAGGAAAATTAGATATGCTAAGAGCTCAAGATCTTTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972754
Expected error %
0.234102
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38733.1| Score 102 E Value 2e-44 Identity 47.00% Align. Length 688bp (99.28%) Frame 3
putative retrotransposon gag protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 99 E Value 2e-31 Identity 49.50% Align. Length 538bp (77.63%) Frame 3
putative gag-pol protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0067D12
Clone
Clone name
hba-67d12
LE_HBa0067D12
P067D12
Clone type
BAC
Contamination
none
Estimated length
114,985
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found