Clone Read LE_HBa0003N02_T7_54003

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0003N02_T7_54003
Primer
T7
ID from Seq. Facility
LE_HBa_003_N02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
219 trimmed for vector and quality, 797 raw
Genbank Accession
DU079365
Sequence
>LE_HBa0003N02_T7_54003 (raw untrimmed)
GTGGGACCCGGGGGGACGGCTCTAGTCGACCTGCAGGCATGCAAGCTTGTGAGAAGAGTTACCAAGTTTTGAAGGATGGGGCGCCTCAACCCCTATTTTG
ACACTACCAAGAGGATTTTATGGTTTGTAGTTTATCGTGATGTTTCACGAGTAGGATTTGGTTGTGTTTTGAGGCAACGTGGAAAATTCATCGCTCGTAC
TTCTAGGCAATCCAAAGTGCATGGAAAAAATTATATGACTTGTGACGTGAAATTAGTGGTGTTGGTTTTTGCTCTCAAGATATGGAGACATTACTTGGGT
GGTGTTCATGTAAATGTTTTAAGGGACATAATAAGTTTAAAAAAAATGTTCACTTAGATGAATTTTTAATGCTTCTCCAGTCGATATTTCCTGTATGGTT
TATATGATTTGATGGGAGTGTCCTTGATCATCCTATGGGGGAAAGTGGTGTGGATGAAAGCGCTTAGTTTATGATAATGATTAATACAGTGATTGATGAC
TAGATTTTTATTATTTTGTTTTGATTTTTAGATTATTTTAATTAGTAAGAGGAGATAAATGAAAAAGAGGGAGGGTGTGAAAGGAGTGGAGAGGCATGGG
GGGGGGACTTTGGGGACGGGAGAAGTGGTGGATGATCATGGTGAGTATATTAGTATTTGTAATATGAATATTGTGTGATGATAGATAGTGAATAGGATTT
TAGGTTAAGTTTTTGATGCTATAAAGATTAAAGAGTGGATATAGTGAGTTGTGGGGAAGATAAGAAAGTTGAGTGGGTGACATTGAGGTGTAGGTCA
>LE_HBa0003N02_T7_54003 (trimmed for quality and cloning vector)
CCCTATTTTGACACTACCAAGAGGATTTTATGGTTTGTAGTTTATCGTGATGTTTCACGAGTAGGATTTGGTTGTGTTTTGAGGCAACGTGGAAAATTCA
TCGCTCGTACTTCTAGGCAATCCAAAGTGCATGGAAAAAATTATATGACTTGTGACGTGAAATTAGTGGTGTTGGTTTTTGCTCTCAAGATATGGAGACA
TTACTTGGGTGGTGTTCAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.921776
Expected error %
2.03343
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 88 E Value 5e-17 Identity 68.90% Align. Length 217bp (99.09%) Frame 3
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 88 E Value 5e-17 Identity 68.90% Align. Length 217bp (99.09%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0003N02
Clone
Clone name
hba-3n2
LE_HBa0003N02
P003N02
Clone type
BAC
Contamination
none
Estimated length
115,833
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found