Clone Read LE_HBa0011B13_T7_5412

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0011B13_T7_5412
Primer
T7
ID from Seq. Facility
LE_HBa_011_B13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
881 trimmed for vector and quality, 965 raw
Genbank Accession
DU025065
Sequence
>LE_HBa0011B13_T7_5412 (raw untrimmed)
GGGAGAATGGCTCCCGGGGGAATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCATCCTATAAAGTGGAGATACCCTTTCATGTTGGAAAGGGAAAAAG
TAACTACCTAGGCTTATCCATCACAGAGAAGAGGGTCCCAGTCATGATGGCATGAGATGCAGTTGCAAGAACACCCAGATGCATGCTGTGACTTGAAATC
ACAGAAGATGGCATATTATTTAACTGTCTCATGAGTCTCCTAACACCAACTCGAAGCTCCCCACTGTCTCCCCTGCAGAGATAAAGAAATGATGGAAGGG
TTATGAAAGAGAATTTTTATAAATATACACTTCCAGTAAAATATGGCTGGATATGTTACTCATAAACTTGCCTGAGAAATATGAAAGCATCACCAGCAAC
CAACTTCTTTGCACTGACAAAAACACTCCACCCAGTTGTTAGCAAGTGTCGCCTAGGTTGACCTGATCGTGAAGTCAAAATTTATTTTGAGAACTAAACA
GAAGATTATACGTAATGACAAAACCACGGAAAAAAATTACATAAATAACCTCGAAAAATGTGGCGAAAGTGCCATTCATTGCCATGTAGATCACTGGCGA
CCAATTCCTGCCATGGTGGTTGCTGTGACATATCCTGAAATATGTAGCAAAAATTAATGAGATGAATTAATGGATAGGGGTAGAGGAGTTCAGAAGGGTG
AAGCCAAGACAAGGCATAATTCTGAAATACAAGCTTACCAGTGGAGGCAAACATTCATCTGCATGCCTTCCGAGAACAGAAAACCCACCATGGGTGCTAG
TATCAGATGCAGTAAGAGTTTTGCAAACGAATGGACAGTGCACTTTTCAAGTTCAGGGAAGAGGGGGAATAGGGTTGTGATCTCCCCTGCTAAACCATAA
AAGAAAAAGGAAAATGCAGATGTTTTGAAAAAGGATGCCTTGAAGTGCTATGATAAAACTCAAAA
>LE_HBa0011B13_T7_5412 (trimmed for quality and cloning vector)
AGCTTCATCCTATAAAGTGGAGATACCCTTTCATGTTGGAAAGGGAAAAAGTAACTACCTAGGCTTATCCATCACAGAGAAGAGGGTCCCAGTCATGATG
GCATGAGATGCAGTTGCAAGAACACCCAGATGCATGCTGTGACTTGAAATCACAGAAGATGGCATATTATTTAACTGTCTCATGAGTCTCCTAACACCAA
CTCGAAGCTCCCCACTGTCTCCCCTGCAGAGATAAAGAAATGATGGAAGGGTTATGAAAGAGAATTTTTATAAATATACACTTCCAGTAAAATATGGCTG
GATATGTTACTCATAAACTTGCCTGAGAAATATGAAAGCATCACCAGCAACCAACTTCTTTGCACTGACAAAAACACTCCACCCAGTTGTTAGCAAGTGT
CGCCTAGGTTGACCTGATCGTGAAGTCAAAATTTATTTTGAGAACTAAACAGAAGATTATACGTAATGACAAAACCACGGAAAAAAATTACATAAATAAC
CTCGAAAAATGTGGCGAAAGTGCCATTCATTGCCATGTAGATCACTGGCGACCAATTCCTGCCATGGTGGTTGCTGTGACATATCCTGAAATATGTAGCA
AAAATTAATGAGATGAATTAATGGATAGGGGTAGAGGAGTTCAGAAGGGTGAAGCCAAGACAAGGCATAATTCTGAAATACAAGCTTACCAGTGGAGGCA
AACATTCATCTGCATGCCTTCCGAGAACAGAAAACCCACCATGGGTGCTAGTATCAGATGCAGTAAGAGTTTTGCAAACGAATGGACAGTGCACTTTTCA
AGTTCAGGGAAGAGGGGGAATAGGGTTGTGATCTCCCCTGCTAAACCATAAAAGAAAAAGGAAAATGCAGATGTTTTGAAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961
Expected error %
1.53953
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g59750.1 Score 171 E Value 2e-56 Identity 55.10% Align. Length 747bp (84.79%) Frame 2
68414.m06727 auxin-responsive factor (ARF1) identical to auxin response factor 1 GI:2245378 from [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g59750.2 Score 171 E Value 2e-56 Identity 55.10% Align. Length 747bp (84.79%) Frame 2
68414.m06728 auxin-responsive factor (ARF1) identical to auxin response factor 1 GI:2245378 from [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE02512.1| Score 179 E Value 4e-58 Identity 58.50% Align. Length 777bp (88.20%) Frame 2
P0076O17.10 [Oryza sativa (japonica cultivar-group)] ref|XP_472625.1| P0076O17.10 [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE04227.2| Score 179 E Value 4e-58 Identity 58.50% Align. Length 777bp (88.20%) Frame 2
OSJNBa0064D20.11 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0011B13
Clone
Clone name
hba-11b13
LE_HBa0011B13
P011B13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found