Clone Read LE_HBa0074G09_SP6_55216

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074G09_SP6_55216
Primer
SP6
ID from Seq. Facility
LE_HBa_074_G09-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
612 trimmed for vector and quality, 939 raw
Genbank Accession
DU079871
Sequence
>LE_HBa0074G09_SP6_55216 (raw untrimmed)
GGGGCTTTTTAGGATAGCTGGTTGGATTTTTTGGATTGACGGAATTCAATGTTCCGCCTTGCGGGGCAGGACACGCTCCCCCACCTGAACTGGCGACGAC
CCTGACGCCACATAGCTGCAGGTACCGATGGACCTTGTCGTGGAACTGCCACAAGTCTTCGTACTTCTCCCAAGTTGCCTCTTCCGGTGCCGTTCCCTTC
CAGTGAACAAGGAATTGTGAACTTGAATTGTTCCAGCCTATCCCACGAACCAGCTGGTGATCAATGATCACCTCAATCTGTTTGTCTACAGTAGGCGGCG
TTATGAAAATTCTGTCCCTCTCGGACTGCCCCCGATCCTTATCCTCTTTGTCTTCAAAGTAGGGCTTTAATTGGCTTGCGTGGAAGACCGGATGAATCTT
CAGATGGTGTGGCATGTCTATCCAATAGGAGATTTTGCCAGCCTTGGCAACAATCTCAAATGGCCCCTCGTACTTACGAATCAAATTCTGATTCACGCCT
CGCAGTGACTTGAATTGCCGGGGATTCAGTTTCACCATCACTCCATCTCCAATCTGATAATTCACCGGACATCGCCTACGATCAGCAAACTTTTTCATTT
TTCGGGCAGCCTTGTCGAGGTACGACCGTGCAAGGTGGACCTGCTCTTCCCAGGCCTTGGCCATTTGATAGGCACCTGGACTTTTTGAACCAGTATCAAC
AGGCAAGGACTGGGGTGTTGTTGGCTGCTGCCCCGTCGCTAACCCGAATGGACTCTTCCCCGTTGCCTCACTGCGCTGCAAATTATATGAAAAACTGGGC
CGGGCCTACAACCTTGCCCAGTCCCTTTAATTTCAACAAACATAGCAGCCCCAATAACATCCAATAAAGCATTAATTCTCTCCTCTGGCCAACCGCCTGA
AGGGGAAACCGGACACAAATGCAACTCTACCTAGAAAGC
>LE_HBa0074G09_SP6_55216 (trimmed for quality and cloning vector)
TGACGGAATTCAATGTTCCGCCTTGCGGGGCAGGACACGCTCCCCCACCTGAACTGGCGACGACCCTGACGCCACATAGCTGCAGGTACCGATGGACCTT
GTCGTGGAACTGCCACAAGTCTTCGTACTTCTCCCAAGTTGCCTCTTCCGGTGCCGTTCCCTTCCAGTGAACAAGGAATTGTGAACTTGAATTGTTCCAG
CCTATCCCACGAACCAGCTGGTGATCAATGATCACCTCAATCTGTTTGTCTACAGTAGGCGGCGTTATGAAAATTCTGTCCCTCTCGGACTGCCCCCGAT
CCTTATCCTCTTTGTCTTCAAAGTAGGGCTTTAATTGGCTTGCGTGGAAGACCGGATGAATCTTCAGATGGTGTGGCATGTCTATCCAATAGGAGATTTT
GCCAGCCTTGGCAACAATCTCAAATGGCCCCTCGTACTTACGAATCAAATTCTGATTCACGCCTCGCAGTGACTTGAATTGCCGGGGATTCAGTTTCACC
ATCACTCCATCTCCAATCTGATAATTCACCGGACATCGCCTACGATCAGCAAACTTTTTCATTTTTCGGGCAGCCTTGTCGAGGTACGACCGTGCAAGGT
GGACCTGCTCTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.982002
Expected error %
0.0566427
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD13304.1| Score 159 E Value 5e-38 Identity 15.10% Align. Length 530bp (86.60%) Frame 3
polyprotein [Lycopersicon esculentum] pir||T17459 polyprotein - tomato
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO23078.1| Score 107 E Value 2e-22 Identity 12.80% Align. Length 467bp (76.31%) Frame 3
polyprotein [Glycine max]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074G09
Clone
Clone name
hba-74g9
LE_HBa0074G09
P074G09
Clone type
BAC
Contamination
none
Estimated length
114,794
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found