Clone Read LE_HBa0074L17_SP6_55472

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0074L17_SP6_55472
Primer
SP6
ID from Seq. Facility
LE_HBa_074_L17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
655 trimmed for vector and quality, 935 raw
Genbank Accession
DU080105
Sequence
>LE_HBa0074L17_SP6_55472 (raw untrimmed)
CCCGGCTTTGGGGTGGAGGAATGAAGACTTGGTTTTTCCTGGAGAGGGGAGTTACCTTGGTAGGCAGGTGTCAATCCCTGTAGAGTGGGGGCGAGGTACA
NAGGTTGACACGAAGAAGTTCTTGAAGGCCACTGGTGATGACCTGGCCCCATAGACCCCCATGCCTGTCATATACAAGATGATAACCATTGTAATGTTGC
AGAATGATTTTTAGCCAGGGTTTGGATTGGAAAGAGATTCCCAAGGAATTATTGAGCATGTTCAGATCCTAGTTAAGGGATTCAGATATGGTTTGGGGTA
CATCCCCACAGATGATGACATGAAAGTGAAGAAGAAAAATGCTCTAGTCTTTACTAGGTCGATCGCACATCTGTATCAATCCTTTCCAATCTAAGAGTAT
GCCGAGCATGAAGACCTTTTTGTAGGATTCTGTGACCTCCTCGAAGAGATAGATGCTGTTGTCAAGGAAGAGGTCGAGCTAGCTGGTATCCGTGATGCTG
AGCGAGGGGAGGTGCTGCGACACTGGACTTCCACGCCAATCCTGATACCCCGAACTCTTCGGTAGAAAGGCGTTATTTCATGCACATTAAAATCGGTGGT
AGTCCGGAAGAGGACCAATACCCACCCATTTTTGCATTTTCTTAACTGTTCAAATTTTTAAATTTTCATTGTGATGTTCAAAAAAGGGAACACGGCCCCA
TTTTATGGCCAAAGTTTGCTTTTTGTTATTTTTATTATTTTGAAAACCCCCCTTTGTTTTTTACATCCAATAAAATAGGCATTTAGTAACTCGTACTTTG
CTAACTTTACCTATTACGGATTCCCGTCACATAAATTACGGAACCACCCACCACAAGGACCTGCCTAGCGCCTAATGAAATAACATGCCAATAGTACCTC
CCTCACTATTTTACAATCAATCCGAGTACTGATTC
>LE_HBa0074L17_SP6_55472 (trimmed for quality and cloning vector)
TTGGTTTTTCCTGGAGAGGGGAGTTACCTTGGTAGGCAGGTGTCAATCCCTGTAGAGTGGGGGCGAGGTACANAGGTTGACACGAAGAAGTTCTTGAAGG
CCACTGGTGATGACCTGGCCCCATAGACCCCCATGCCTGTCATATACAAGATGATAACCATTGTAATGTTGCAGAATGATTTTTAGCCAGGGTTTGGATT
GGAAAGAGATTCCCAAGGAATTATTGAGCATGTTCAGATCCTAGTTAAGGGATTCAGATATGGTTTGGGGTACATCCCCACAGATGATGACATGAAAGTG
AAGAAGAAAAATGCTCTAGTCTTTACTAGGTCGATCGCACATCTGTATCAATCCTTTCCAATCTAAGAGTATGCCGAGCATGAAGACCTTTTTGTAGGAT
TCTGTGACCTCCTCGAAGAGATAGATGCTGTTGTCAAGGAAGAGGTCGAGCTAGCTGGTATCCGTGATGCTGAGCGAGGGGAGGTGCTGCGACACTGGAC
TTCCACGCCAATCCTGATACCCCGAACTCTTCGGTAGAAAGGCGTTATTTCATGCACATTAAAATCGGTGGTAGTCCGGAAGAGGACCAATACCCACCCA
TTTTTGCATTTTCTTAACTGTTCAAATTTTTAAATTTTCATTGTGATGTTCAAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977352
Expected error %
1.43631
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 133 E Value 4e-30 Identity 15.70% Align. Length 446bp (68.09%) Frame 2
gag-pol polyprotein-like [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0074L17
Clone
Clone name
hba-74l17
LE_HBa0074L17
P074L17
Clone type
BAC
Contamination
none
Estimated length
105,447
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found