Clone Read LE_HBa0088A08_SP6_55694

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0088A08_SP6_55694
Primer
SP6
ID from Seq. Facility
LE_HBa_088_A08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
690 trimmed for vector and quality, 902 raw
Sequence
>LE_HBa0088A08_SP6_55694 (raw untrimmed)
CCAATAATAACCAGCTTAAGTCCATCCTCGAAACTGGCAAAGGCAATCAGATTAGTGGAATCCAAATACTTGTATCTTAAACGGTGGGAAGGATAAGAGA
CTACATCCAGACACAAGCCACTACTAAAGCATAATGTTATGTAGGGTAGAAACCTGAAAGCTCCAGTAAATGCCAGAGCAGTGTATTCACCCAAGCTCAG
ACCACATGTGACGTCAACCGAATCAATTATTTGCTGACCCCCTTCACGAGCACGGAGTATCTCTACTGCAGCTAAGCTAGTGACATAGATGGCTGGCTGG
GAACAAGTAAATTATGAGCCAGTCAAAAATGATTGTATAAGACTATAAGTTACATCCTATTGTCATCATAAACATCATCTATAACACTTCATCTGTTTAC
TAGAAAGCAAAACGTGCATGCATTGCAAAACCTTTTGCTGTTCCTTCTGTATATGTGATTTAACGGGATCAATGTGTTTTAGTTATTAACAAGAACTGTA
ATACAAAATAAGAGGTGCGAGTCAAAAACAAGAAAAATATGATGAAACAAATACCTGGCTTAGAACAGTGGAGTCTAACTTCTCTTTTGGACCATTAATA
CAAATATCCAAAAGGTCAAACCTGTAAGCAAGGATGAAGAAATATGAACATGAAATGCTTGATTATCAATCACCATATCTATCAGTTTCAACTCAATCCA
AAAATTTACGAACACGAATTATGAGGAAAATGTTTATAGATTGTTGATCAGAGCATTTATGAGACTTCATCCATCATATTTACCCCATGATTTCATTTGC
TCTCTTGTATAAATCACCTGCAGCAGGCAACTTCTGAGCCTCTGCACCCTTTCCACAACTTGTGCCCCCTGAAAAATATAAAGCTGAAAAATTGTTTGCC
TG
>LE_HBa0088A08_SP6_55694 (trimmed for quality and cloning vector)
CCTCGAAACTGGCAAAGGCAATCAGATTAGTGGAATCCAAATACTTGTATCTTAAACGGTGGGAAGGATAAGAGACTACATCCAGACACAAGCCACTACT
AAAGCATAATGTTATGTAGGGTAGAAACCTGAAAGCTCCAGTAAATGCCAGAGCAGTGTATTCACCCAAGCTCAGACCACATGTGACGTCAACCGAATCA
ATTATTTGCTGACCCCCTTCACGAGCACGGAGTATCTCTACTGCAGCTAAGCTAGTGACATAGATGGCTGGCTGGGAACAAGTAAATTATGAGCCAGTCA
AAAATGATTGTATAAGACTATAAGTTACATCCTATTGTCATCATAAACATCATCTATAACACTTCATCTGTTTACTAGAAAGCAAAACGTGCATGCATTG
CAAAACCTTTTGCTGTTCCTTCTGTATATGTGATTTAACGGGATCAATGTGTTTTAGTTATTAACAAGAACTGTAATACAAAATAAGAGGTGCGAGTCAA
AAACAAGAAAAATATGATGAAACAAATACCTGGCTTAGAACAGTGGAGTCTAACTTCTCTTTTGGACCATTAATACAAATATCCAAAAGGTCAAACCTGT
AAGCAAGGATGAAGAAATATGAACATGAAATGCTTGATTATCAATCACCATATCTATCAGTTTCAACTCAATCCAAAAATTTACGAACAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963568
Expected error %
0.0174193
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g30200.2 Score 92 E Value 4e-19 Identity 29.40% Align. Length 152bp (22.03%) Frame 3
68415.m03673 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g30200.1 Score 92 E Value 4e-19 Identity 29.40% Align. Length 152bp (22.03%) Frame 3
68415.m03672 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG43518.1| Score 96 E Value 1e-18 Identity 30.70% Align. Length 152bp (22.03%) Frame 3
malonyl-CoA:ACP transacylase [Perilla frutescens]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM64515.1| Score 92 E Value 2e-17 Identity 29.40% Align. Length 152bp (22.03%) Frame 3
putative malonyl-CoA:Acyl carrier protein transacylase [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0088A08
Clone
Clone name
hba-88a8
LE_HBa0088A08
P088A08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found