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Clone Read LE_HBa0101L17_SP6_57008

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0101L17_SP6_57008
Primer
SP6
ID from Seq. Facility
LE_HBa_101_L17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
428 trimmed for vector and quality, 810 raw
Genbank Accession
DU080758
Sequence
>LE_HBa0101L17_SP6_57008 (raw untrimmed)
GTTTGGGCTTCGGGGAGGTCAGCGGCGTCGTCCTATCTCTATAGTTGCTGATCAAGACTGGGTCATTCAACACCCCTTTTGCTCAAGTTTTCCCCGGGAC
ACATCATCGGATTTCCCCATGGCAAGTTGTGGCTAAGGAGCAGGAAAACATTGGTGCATTACTCTCGATGAATCCTGAATTTAAGTATGAATATGAAACT
TCCATTTTCCAGAGCCAGACGGCTAATGAGTTTGAAGCAGCATGGAATGTGCTTATTAACAAGTATAATTTGAGAGAGAACACATGGTTGAAGGATATGT
ATAGGATGCGGAAGAGCTGGGTACCGTTATACATTAAAGGCACATTCTTTGCTGGCATTCCAACGGACGGGAGCTTGAAATTATATTTTGGCACATTATT
GACATCTCAAGCACCACTTAGTGAATTTTTTATACGGTACGAAAAATCCCTTGAGCAACGTCGTGAAGAGGAAATAAAAAAGGATCTCCCACTCATTCAA
TTTGCAAGCAGTTTCTGCACATAAAGGACCTTATAAAGGACCAGTGTACAAGGCTTTACTCTATTACCATGTTCAAAAGTGCTCCACAATGAGCTTATGG
AGTGTCATTTTTATGTGTAGAATATTCATAAATGTTAAAGGTGCCATTACATTTGGTACTTGATACAATAACTTGAAAAATATGTGATATTAGATATATA
AAAATTGACTATCAAAGACTCCTATACTTATCATTATAACTGTCTTATTAAAATATTATTATTAATAGAAAGTATACTCTTTTATCAACTATACCATACC
ATTCTCATTA
>LE_HBa0101L17_SP6_57008 (trimmed for quality and cloning vector)
CGTCGTCCTATCTCTATAGTTGCTGATCAAGACTGGGTCATTCAACACCCCTTTTGCTCAAGTTTTCCCCGGGACACATCATCGGATTTCCCCATGGCAA
GTTGTGGCTAAGGAGCAGGAAAACATTGGTGCATTACTCTCGATGAATCCTGAATTTAAGTATGAATATGAAACTTCCATTTTCCAGAGCCAGACGGCTA
ATGAGTTTGAAGCAGCATGGAATGTGCTTATTAACAAGTATAATTTGAGAGAGAACACATGGTTGAAGGATATGTATAGGATGCGGAAGAGCTGGGTACC
GTTATACATTAAAGGCACATTCTTTGCTGGCATTCCAACGGACGGGAGCTTGAAATTATATTTTGGCACATTATTGACATCTCAAGCACCACTTAGTGAA
TTTTTTATACGGTACGAAAAATCCCTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977233
Expected error %
1.00018
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g18960.1 Score 143 E Value 3e-37 Identity 51.20% Align. Length 426bp (99.53%) Frame 2
68418.m02252 far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g06250.1 Score 142 E Value 1e-36 Identity 52.40% Align. Length 426bp (99.53%) Frame 2
68416.m00718 far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101 domain: FAR1 family
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_197397.1| Score 143 E Value 1e-35 Identity 51.20% Align. Length 426bp (99.53%) Frame 2
far-red impaired responsive protein, putative [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF30318.1| Score 142 E Value 5e-35 Identity 52.40% Align. Length 426bp (99.53%) Frame 2
unknown protein [Arabidopsis thaliana] gb|AAN12887.1| unknown protein [Arabidopsis thaliana] gb|AAK25980.1| unknown protein [Arabidopsis thaliana] ref|NP_566278.1| far-red impaired responsive protein, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0101L17
Clone
Clone name
hba-101l17
LE_HBa0101L17
P101L17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found