Clone Read LE_HBa0122D08_SP6_57374

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122D08_SP6_57374
Primer
SP6
ID from Seq. Facility
LE_HBa_122_D08-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
709 trimmed for vector and quality, 808 raw
Sequence
>LE_HBa0122D08_SP6_57374 (raw untrimmed)
GTTGGGAAGTATAGAAAGTCAGATACCGCGGAGAAACACGTTCGCTATGCAGTCCACTCACAACCTAGCCAAAGATGAGATTCGTGAAGAAATGGCTCAG
ATAAGAACTGAGCTTGGGTTGGTGCTAAAACATGTCACAGGGAGTGCAGAAAAGATAAATGCAGTAAACTACTTGTCTAAACAACCACCTCCTAATGATG
AATGTTATTATGCAGAGGACTCCTGCGGTAAATGAGAAGACGGGGGGTTTCCGACCGAGCTCCCAAGCCTCAAATCAGGATAATTGGCGCCAAGGTCAAG
GGAACCAAGGTCAAATCTATGGTAACTTCAACCATGAGGGTCATTATGTCCAAGATGGAAACTACAACTGCGACAATAACTTTAATAGGGGTAACTACGG
TAATAGAAATTATAGGAATGGGCCCTATGTCCCTCCTCAAAATCATTAAGTTACTCCTAGGAATGGTGGAGATAGTATGGCGGGAGTTGAGGATATGTTG
CACAAAATGATGAGGAGGTTTGATGCTAGTGATGAGCACATTAAAGAGTTAAGGTGCGATTTAGTAAGTATTGTGCAAAAAGTCTATACGCATGCAATAT
CGATTAAGCAGATCGAGCTGCAAATGGCCCAATTATCTGCGATAATGAACACACGGCAACCGGGCACTCTTCCTAGCAACACTGTCAAAAATCCAAAAAA
TGATGCGTACTTTATGGCAATCACTACTCGGGGGGGGGGGGGGGGAANNATANATTTAATATATTATTAATTATTATTAAAAAAAATGTTTAAATATTTA
ATAATATA
>LE_HBa0122D08_SP6_57374 (trimmed for quality and cloning vector)
GAGAAACACGTTCGCTATGCAGTCCACTCACAACCTAGCCAAAGATGAGATTCGTGAAGAAATGGCTCAGATAAGAACTGAGCTTGGGTTGGTGCTAAAA
CATGTCACAGGGAGTGCAGAAAAGATAAATGCAGTAAACTACTTGTCTAAACAACCACCTCCTAATGATGAATGTTATTATGCAGAGGACTCCTGCGGTA
AATGAGAAGACGGGGGGTTTCCGACCGAGCTCCCAAGCCTCAAATCAGGATAATTGGCGCCAAGGTCAAGGGAACCAAGGTCAAATCTATGGTAACTTCA
ACCATGAGGGTCATTATGTCCAAGATGGAAACTACAACTGCGACAATAACTTTAATAGGGGTAACTACGGTAATAGAAATTATAGGAATGGGCCCTATGT
CCCTCCTCAAAATCATTAAGTTACTCCTAGGAATGGTGGAGATAGTATGGCGGGAGTTGAGGATATGTTGCACAAAATGATGAGGAGGTTTGATGCTAGT
GATGAGCACATTAAAGAGTTAAGGTGCGATTTAGTAAGTATTGTGCAAAAAGTCTATACGCATGCAATATCGATTAAGCAGATCGAGCTGCAAATGGCCC
AATTATCTGCGATAATGAACACACGGCAACCGGGCACTCTTCCTAGCAACACTGTCAAAAATCCAAAAAATGATGCGTACTTTATGGCAATCACTACTCG
GGGGGGGGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.976312
Expected error %
0.0201303
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38730.1| Score 98 E Value 9e-38 Identity 33.70% Align. Length 672bp (94.78%) Frame 3
putative reverse transcriptase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122D08
Clone
Clone name
hba-122d8
LE_HBa0122D08
P122D08
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found