Clone Read LE_HBa0122F17_SP6_57488

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122F17_SP6_57488
Primer
SP6
ID from Seq. Facility
LE_HBa_122_F17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
706 trimmed for vector and quality, 807 raw
Sequence
>LE_HBa0122F17_SP6_57488 (raw untrimmed)
GTTTCAAAGGATTCCTACGAGAGCCAAGGAAAGTGCGGGTTGGAAATGGTCCATACAGATGTTTGGGGGACCATCTCTAGTATCATCACTTGGAGGATCG
AGATTCTATGTTACCTTCATTGATGATTTCAGCAAGAAGGTATGAGTTTACTTCTTGAAGCATAAGTCAGATGTGTTTGCAACTTTCAAGAAGTGGAAAG
CTGAAGTTGAGAATCAGACCAGTTTGAAAGTCAAATGCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATCAAAGTTCAAGGCATTCTGTGCAGCTGA
GGGAATCAGATTGATGAGAACAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGG
ATACAATGTGGGCTGCCCAAAACACTTTGGGCAGAGGCTGTGAGCACAACTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTC
CAGAGGAGGTGTGGAGAGGAAAATAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCATTGCTAATGTTCATGTTGATCCAGAAAAGAGAGACAACCT
TGATGCCAAGGTTGTGAAGTGTTACTTCATAGGCTATGGTTCTGATTTATTTGGTTACAGATTTTGGGATGACAAGAACAGAAGATCCTGAGACACTTTG
ACGTGACATTTGATGAGTCTGTCCTGTTCAAAGACAGAGAGCAAAAGGTTCTAGAGATTACAAAGCAAGTTGGAGTTGAGGTTGAGTTGAAGAAGAATAC
CCCCAAA
>LE_HBa0122F17_SP6_57488 (trimmed for quality and cloning vector)
GAGAGCCAAGGAAAGTGCGGGTTGGAAATGGTCCATACAGATGTTTGGGGGACCATCTCTAGTATCATCACTTGGAGGATCGAGATTCTATGTTACCTTC
ATTGATGATTTCAGCAAGAAGGTATGAGTTTACTTCTTGAAGCATAAGTCAGATGTGTTTGCAACTTTCAAGAAGTGGAAAGCTGAAGTTGAGAATCAGA
CCAGTTTGAAAGTCAAATGCCTAAGGTCTGACAATGGAGGAGAGTATGACAAATCAAAGTTCAAGGCATTCTGTGCAGCTGAGGGAATCAGATTGATGAG
AACAGTTCCTGGTAAGGCAAGGCAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACAATGTGGGCTGCCC
AAAACACTTTGGGCAGAGGCTGTGAGCACAACTGCATACTTGATCAACAGGGGACCATCAGTTCCTTTAGGGTTCAAGATTCCAGAGGAGGTGTGGAGAG
GAAAATAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCATTGCTAATGTTCATGTTGATCCAGAAAAGAGAGACAACCTTGATGCCAAGGTTGTGAA
GTGTTACTTCATAGGCTATGGTTCTGATTTATTTGGTTACAGATTTTGGGATGACAAGAACAGAAGATCCTGAGACACTTTGACGTGACATTTGATGAGT
CTGTCC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.95286
Expected error %
0.219822
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA32025.1| Score 223 E Value 4e-57 Identity 18.10% Align. Length 584bp (82.72%) Frame 3
unnamed protein product [Nicotiana tabacum] sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Contains: Protease ; Reverse transcriptase ; Endonuclease]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK29467.1| Score 216 E Value 3e-55 Identity 18.40% Align. Length 569bp (80.59%) Frame 3
polyprotein-like [Lycopersicon chilense]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122F17
Clone
Clone name
hba-122f17
LE_HBa0122F17
P122F17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found