Clone Read LE_HBa0122L18_T7_57779

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0122L18_T7_57779
Primer
T7
ID from Seq. Facility
LE_HBa_122_L18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
701 trimmed for vector and quality, 811 raw
Sequence
>LE_HBa0122L18_T7_57779 (raw untrimmed)
GCTGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAATAGCTGCAATAAGCTCAGCCTTTTTAGTAGATAAAGCAACACATTTTG
CAATCTAAATTGCCCAGACACAACTCCCCCTACAAAGGTAATCAACTAGCCTAAAGTAGACTAATGAGTGTCAACATCACCAGCCATGTCTGAATCAGTA
TAACCACAAAGAATAGGTTTCCCTATCCCAAAACACAAACTCAGACTAAAAGTGCCACCAAGATATATCATAATCCACTTTATAACATTCCAATGCTCTC
TTTCTGGATTAGAAAGAAAACAACTAACAATACCAACAACGTGAGAAATATCTAGTCTTGTACACACCATTGCATAAATCAAACTACCAACAACTGAAGC
ATAATGAATATGATTCATATCTTCATTCTCACCATCACTGGAAGGACAATGTCTAGTACTGAATTTGAAGTACATAGCTAAAGGTGTACTGACGACCTTA
GATTTGTCCATGTTAAATCTACAAAGTACTTTCTGAATGTACTTCTCTTGTGACAACCACAATTTCTTGGCATATCTATCATGGACAATCTACATGTCAA
GGATTTGCCTTGCTGGTCCCAAGTCTTTCATAGCAAAAGACTTATTTAATTCTTGCTTCAACTCTTTGATCCTGCAAGCGTTCTAACCAATAACAAGCAT
GTCATTCACATAAAGCAAAACGATTAATAAAGTCATTTATAAAGAAGAATTTTGGCTTAAAAACACCAATGGTCTGAAGAATGTCTTATGAAGCCCTAAC
TGACTAATAAA
>LE_HBa0122L18_T7_57779 (trimmed for quality and cloning vector)
AGCTTCAATAGCTGCAATAAGCTCAGCCTTTTTAGTAGATAAAGCAACACATTTTGCAATCTAAATTGCCCAGACACAACTCCCCCTACAAAGGTAATCA
ACTAGCCTAAAGTAGACTAATGAGTGTCAACATCACCAGCCATGTCTGAATCAGTATAACCACAAAGAATAGGTTTCCCTATCCCAAAACACAAACTCAG
ACTAAAAGTGCCACCAAGATATATCATAATCCACTTTATAACATTCCAATGCTCTCTTTCTGGATTAGAAAGAAAACAACTAACAATACCAACAACGTGA
GAAATATCTAGTCTTGTACACACCATTGCATAAATCAAACTACCAACAACTGAAGCATAATGAATATGATTCATATCTTCATTCTCACCATCACTGGAAG
GACAATGTCTAGTACTGAATTTGAAGTACATAGCTAAAGGTGTACTGACGACCTTAGATTTGTCCATGTTAAATCTACAAAGTACTTTCTGAATGTACTT
CTCTTGTGACAACCACAATTTCTTGGCATATCTATCATGGACAATCTACATGTCAAGGATTTGCCTTGCTGGTCCCAAGTCTTTCATAGCAAAAGACTTA
TTTAATTCTTGCTTCAACTCTTTGATCCTGCAAGCGTTCTAACCAATAACAAGCATGTCATTCACATAAAGCAAAACGATTAATAAAGTCATTTATAAAG
A

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.946465
Expected error %
0.717876
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 72 E Value 3e-13 Identity 9.70% Align. Length 635bp (90.58%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 288 E Value 7e-77 Identity 22.50% Align. Length 629bp (89.73%) Frame 1
hypothetical retrotransposon [Ipomoea batatas]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 269 E Value 6e-71 Identity 21.30% Align. Length 629bp (89.73%) Frame 1
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0122L18
Clone
Clone name
hba-122l18
LE_HBa0122L18
P122L18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found