Clone Read LE_HBa0123B11_SP6_58052

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123B11_SP6_58052
Primer
SP6
ID from Seq. Facility
LE_HBa_123_B11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
608 trimmed for vector and quality, 922 raw
Genbank Accession
DU080973
Sequence
>LE_HBa0123B11_SP6_58052 (raw untrimmed)
CCCGGGTTTTTATATTTCCAACAACTGCATTTTCCAAAGCTGCTGGTGGTTTTGGTTCCATCAGGATCTTTAGCGGACCTTTCGTACATGTTCCTCTCCC
TCCTTATGCTGGCGCCTTCACCGTCCTTATTGGAGATTGGTACAAGAGAAATCACACGGTACTTATATATATATATATATATGAATTTACCATGCTAGAT
GTCATTATATTTGTTTGACGATTTCGTTTTGATACTTATTAGTTTTGATGCAGAACCTTAAAGCAATTCTTGACAGAGGACACAAGTTGCCTTTTCCTGA
TGGTATTCTCATCAATGGTCGTGGCCCTAATGGCGCTACCTACACAGTTGATCAAGGTAAATACAACTGCAAATGTTTGTATTTGTATAACAGAGTTAGA
AAAGGAATATTCTAACATGCATGAGTATTGCAGGGCAAACGTATAGACTGAGGATATCGAATGTTGGATTGGAAAATTCATTGAACTTTCGTATTGAAGG
ACACAACTTGACGTTGGTGGAAGTAGAGGGTACACACACAATGCAAGAGACGTATACCTCACTCGATGTTCATGTTGGACAATCCTACTCTGTCCTCATC
ACAGCTGATCAAGCACCAAAGGACTACTACATTGTTGTTTCATCTCGTTTCACGTCTAAGGTTCTAACTACTACGGGTGTACTTCATTACATCACGTCTA
AAAGCACGGTCTTCTGGACCGATCCCTAGTGGACCAACCTTCGAAGTTGGTTGGGCTCCTATACAACCCCGTTACACGGGAGTTAACTTGCTTACCCACT
GTACCTGTCACACTTCCTTCATTAACAAAAACAGGGACCAATTTTTTTCATGTTTTGATTAGGAATATATGTTTGCTATGAACTCTGCTCTATCACACGG
GCCCTACATAAGGGTGAATCCC
>LE_HBa0123B11_SP6_58052 (trimmed for quality and cloning vector)
AGCTGCTGGTGGTTTTGGTTCCATCAGGATCTTTAGCGGACCTTTCGTACATGTTCCTCTCCCTCCTTATGCTGGCGCCTTCACCGTCCTTATTGGAGAT
TGGTACAAGAGAAATCACACGGTACTTATATATATATATATATATGAATTTACCATGCTAGATGTCATTATATTTGTTTGACGATTTCGTTTTGATACTT
ATTAGTTTTGATGCAGAACCTTAAAGCAATTCTTGACAGAGGACACAAGTTGCCTTTTCCTGATGGTATTCTCATCAATGGTCGTGGCCCTAATGGCGCT
ACCTACACAGTTGATCAAGGTAAATACAACTGCAAATGTTTGTATTTGTATAACAGAGTTAGAAAAGGAATATTCTAACATGCATGAGTATTGCAGGGCA
AACGTATAGACTGAGGATATCGAATGTTGGATTGGAAAATTCATTGAACTTTCGTATTGAAGGACACAACTTGACGTTGGTGGAAGTAGAGGGTACACAC
ACAATGCAAGAGACGTATACCTCACTCGATGTTCATGTTGGACAATCCTACTCTGTCCTCATCACAGCTGATCAAGCACCAAAGGACTACTACATTGTTG
TTTCATCT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.976795
Expected error %
0.358177
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g41830.1 Score 118 E Value 2e-47 Identity 77.50% Align. Length 606bp (99.67%) Frame 3
68414.m04829 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g21850.1 Score 117 E Value 4e-47 Identity 80.30% Align. Length 606bp (99.67%) Frame 3
68414.m02735 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB08077.1| Score 122 E Value 1e-52 Identity 81.70% Align. Length 606bp (99.67%) Frame 3
pectinesterase [Lycopersicon esculentum] pir||T07129 pollen-specific protein homolog - tomato (fragment)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA65634.1| Score 122 E Value 3e-51 Identity 83.10% Align. Length 606bp (99.67%) Frame 3
PS60 [Nicotiana tabacum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123B11
Clone
Clone name
hba-123b11
LE_HBa0123B11
C12HBa0123B11
P123B11
Clone type
BAC
Contamination
none
Estimated length
35,509
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found