Clone Read LE_HBa0123L18_T7_58547

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0123L18_T7_58547
Primer
T7
ID from Seq. Facility
LE_HBa_123_L18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
306 trimmed for vector and quality, 850 raw
Sequence
>LE_HBa0123L18_T7_58547 (raw untrimmed)
TTAAGCTCGGTACCCGGGGGATCCTCTAGATCGACTNGCAGGCTCGCAAGCTTAACGAGGCATTTTCCCTAGGCGTAAGGATTTTAAAGCTCCAAGGGAG
CTTATGTGTTCACACTATAGATGGGGTTGAGGGACTGGATCCTAGAAGAAGCCCATGCGTCCCGCTACTCAATTCATCCGGGTTCAACAAAAATGTACCA
TGACTTTAGGGAAATCTATTGGTGGTAAGGTATGAAGAAGGTCATAGTGGAGTTTGTCTCTAGGTGTCCAAATTACCAATAAATAAAACCCGAACATCAA
TGTTCAGATGACTTACTACAAGATATCCTAATTCCTACTTGGAAGTGGGAAGACATGACTATGGATTTTGTAGTTTGTTTACATCGGACTCAGATGTCAA
ATGACTCTCTATGGGCGGTTGTGAATTGGAAAATGCTTGCTGTTCAACATTGTCTCATTGCATAATTCATCATAACCGTAATTTCCTAAACTTATCTCTA
ATTTAGACTTTAGTACTGAGTGAGTAGGCTATCAAACAAAGCATAGAGCAACCCTACGACTGAGGCGATTTTCTCCCAGATCCGTGATCCAAGCTACTAT
ATAATACCAATGATATAATAATATACAACATATAAATTTTATGTGAAATGATATAAGGAAGATAAATAATAAGATAAACTGCTCGTCTAAACCAACAGTT
AATGCTTATCAAAGACGAAATAAATATACATCTATTAAGCCTCAATATTAATCCCAACTCTGAACCTAGACGATGGCGACACAACTTATAAACAGATGGA
CACAAGTTGGAACCCGCTTATATAATACATAAACAACTTAAAATACTTTN
>LE_HBa0123L18_T7_58547 (trimmed for quality and cloning vector)
AAGCTTAACGAGGCATTTTCCCTAGGCGTAAGGATTTTAAAGCTCCAAGGGAGCTTATGTGTTCACACTATAGATGGGGTTGAGGGACTGGATCCTAGAA
GAAGCCCATGCGTCCCGCTACTCAATTCATCCGGGTTCAACAAAAATGTACCATGACTTTAGGGAAATCTATTGGTGGTAAGGTATGAAGAAGGTCATAG
TGGAGTTTGTCTCTAGGTGTCCAAATTACCAATAAATAAAACCCGAACATCAATGTTCAGATGACTTACTACAAGATATCCTAATTCCTACTTGGAAGTG
GGAAGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96943
Expected error %
1.35107
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 115 E Value 5e-26 Identity 67.10% Align. Length 279bp (91.18%) Frame 2
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38792.1| Score 112 E Value 1e-24 Identity 64.50% Align. Length 267bp (87.25%) Frame 2
putative gag-pol polyprotein [Solanum demissum] gb|AAT38791.1| putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0123L18
Clone
Clone name
hba-123l18
LE_HBa0123L18
P123L18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found