Clone Read LE_HBa0012E19_T7_5989

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012E19_T7_5989
Primer
T7
ID from Seq. Facility
LE_HBa_012_E19-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
324 trimmed for vector and quality, 716 raw
Genbank Accession
DU025561
Sequence
>LE_HBa0012E19_T7_5989 (raw untrimmed)
TGATTATTTTTTGTCATGATGGTCGCTGGCATGGGAAAGAGGTCATTGTTNGTACTTGTCTATTCAAATGTGAAATCCATGCTGGAAATGTGGTTAACCA
ACGTAAAAAGGGTGGGTTATACCAAATTATCTGGTCGTTGCATTGGATGATGACGTTGTAGATCTCTGTAATGAAAACGGGGTCTTTGCTTACAAGAGAG
ACCCTGATGAGACTGAGAGAGTTCTTGCAGCTTGGCTACAGTGTCCTTTTGATCATCTATACCGCGATTCAGACGTGGAGGTCATGTCCGATGGTCACAA
CAGCATGACAGCTTATGGATACAACGACGTTTCTGGTGAACCTGATATGGGTTGGGCTCGATACACTCAATACAATGAGGATATAGGCTTATAGTTCTGG
TTTCTTCTTATCCGTCCAATGATTCCTGCATTTGATCTCTTGGATCGCGTTTGCTAACAGGCTTACTCTAGGAGTCTAATGTTTTTGACCTGGCTGTTCT
CAATGAAAAGTTTGCCTTTTCCTTCCCAACCCCTGTACATTGGAACTCTATGCCTTCTAAGAAAAGCATTGGATTTCCTTCTGGTTCCTGATTAGCAGAA
ATCTTTCAAAAAAAATTCAATTTAAAAAAGTTGGACTCAGTTCCCGTATCTACAATTTACCCCTCCGAAGTACCTTTTATAATATGAAAGGAATGTTTTT
CAATCCCTATCTTTTA
>LE_HBa0012E19_T7_5989 (trimmed for quality and cloning vector)
CTTGTCTATTCAAATGTGAAATCCATGCTGGAAATGTGGTTAACCAACGTAAAAAGGGTGGGTTATACCAAATTATCTGGTCGTTGCATTGGATGATGAC
GTTGTAGATCTCTGTAATGAAAACGGGGTCTTTGCTTACAAGAGAGACCCTGATGAGACTGAGAGAGTTCTTGCAGCTTGGCTACAGTGTCCTTTTGATC
ATCTATACCGCGATTCAGACGTGGAGGTCATGTCCGATGGTCACAACAGCATGACAGCTTATGGATACAACGACGTTTCTGGTGAACCTGATATGGGTTG
GGCTCGATACACTCAATACAATGA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971715
Expected error %
1.12822
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g19360.1 Score 81 E Value 4e-19 Identity 59.80% Align. Length 309bp (95.37%) Frame 2
68414.m02409 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g75110.1 Score 77 E Value 1e-17 Identity 56.10% Align. Length 309bp (95.37%) Frame 2
68414.m08723 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65662.1| Score 81 E Value 4e-17 Identity 59.80% Align. Length 309bp (95.37%) Frame 2
unknown [Arabidopsis thaliana] ref|NP_564082.1| expressed protein [Arabidopsis thaliana] gb|AAF79453.1| F18O14.8 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_478924.1| Score 80 E Value 2e-14 Identity 19.10% Align. Length 245bp (75.62%) Frame 3
hypothetical protein [Oryza sativa (japonica cultivar-group)] dbj|BAC83249.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012E19
Clone
Clone name
hba-12e19
LE_HBa0012E19
C12HBa0012E19
P012E19
Clone type
BAC
Contamination
none
Estimated length
112,068
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found