Clone Read LE_HBa0134P01_SP6_61008

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0134P01_SP6_61008
Primer
SP6
ID from Seq. Facility
LE_HBa_134_P01-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
120 trimmed for vector and quality, 739 raw
Sequence
>LE_HBa0134P01_SP6_61008 (raw untrimmed)
AGGGCGGGGATGGCAAATTAGAACGAATTTGGGGGGGGGAAATTATCGCCCCTTATTTTTTTAATAATAGAGTTACAAAAATATATGAGGTTATGAGACT
CTCGCACAAAATTCTAACCCCTTCACACTAAGTTTGATTGTGAGAGTTCTACTTATTAAAATTCACTTCCAAAAGCTCTATGAATTTCTTAACATCTTAG
TTACTAGAAAACATGATCCGAGCTTAGACACATCATTCGACCCATCCCAAATTGTCCTAGTATTCAACGCACTCAGACTTCGTTTAACATTAGCCTTGCT
TAAGTTTTTTCGAGTCTTTAATTAATTTTTTTTTATGTAAATCTTTTACTTTATATTTTTCTATTACGATATTCTATGATCATTACTATAATATCTTCCC
ACTTCTTGATTCGTCGATTCGTGTGTTGGTCCGCTTGGTGTTGGAACTCTAGTTTCTCTTATCCTCCATGTCTCCTTGTTTTCTATTCTTATCTTCTTTG
TGTCTATATCTGCCGTTTTGATTCCTTCTTTCTCTCTCTGCCCATCTCATCTCCTATTAAACATAGCTCTTGCCCCCAAGTTCATCACGATTTTCATCTT
GTCTTCTGGTATCGACGTTATATGCCGTCTCACTCGCATATCCGCTTTTATCTTGATACATTTATCATATCAACATTCACATCAAACTATCCCATAACCC
TTCTACTCCACTCACTCTTTACTTTCTTCCGCTATCTTA
>LE_HBa0134P01_SP6_61008 (trimmed for quality and cloning vector)
TAGAGTTACAAAAATATATGAGGTTATGAGACTCTCGCACAAAATTCTAACCCCTTCACACTAAGTTTGATTGTGAGAGTTCTACTTATTAAAATTCACT
TCCAAAAGCTCTATGAATTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.897865
Expected error %
1.15218
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0134P01
Clone
Clone name
hba-134p1
LE_HBa0134P01
P134P01
Clone type
BAC
Contamination
none
Estimated length
111,968
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found