Clone Read LE_HBa0135G10_SP6_61362

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0135G10_SP6_61362
Primer
SP6
ID from Seq. Facility
LE_HBa_135_G10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1339 raw
Sequence
>LE_HBa0135G10_SP6_61362 (raw untrimmed)
ATGTAGAGCTACTTCGATTGNTCACTCANGAAAGTGACNGCGTACGGCAAGAGTCATCCGTGTCTATGAACACATACTTCCCCCGTCTTCTATGCATATG
ACTATCATCGTATACTGCTAAGTCACGCGGGTGCTATATACCGTATTATGAGCTCAGAGAATGAACACTACAGTCTATCATATAATTTCTGTAATATGGC
TACCCCACGACCTNCTGTATACTGATAAAAAGCTATGTACTTTATAGAGCTACAGTNCTCTGTATAGCTCCTGTATATCTATTGCTAATGTGGGATCGAA
TTAATCCTGTGGATGNCTACACAATTTCATATACATATATGAGTGAACGAACAGCTAANGCTATCCTTTAGTAATACTGGAGTNTCGTAACTATATGTTC
ATACTAACTGGCACTGGCGTAACGAAGAGGGTTACATATGNNNTTACTCTAAGTACGCTGTTACGTGTCTACTTGCACGTAGTCGTGCTCGCTANGATAC
TTAGTCGACATCAGTGCCNGAACAANAGCTTACGCCGATCCTCATATACATTTCCTATATAGCACAAGCAAACATACATGGCGTAGCCTAGCCTCCCCAA
NGAGCAGCAGTGTCGACNTGTAGAGATGCTCATATTGAATANGACTCCTTCTAGATCTCCACAGTAGATCNTGCCTCTCGTATAGATGTCGATGCTCTAT
CTTCATAATTTCTAGCGTATATAACGCTCTCTACGGATGTACGCTCCTATNTACATGAGTAATACCGTGCGTCGTAGTAATTGATATATAGCGTGTGNCN
GACGNTCTACCAGATGTGTTTCCAATTAAATTCTATTTCATCATGTCTACCTTAGTTATTAATATTATGTATGTATATAAGAAGATGGTATGATGTTTAT
GGTGAATGATATAATTGNGTAATGGGTGAAGATATTATTTTTAATGTAGAATTTNGTATATAAAAATTTGTATATGTTAAATAATTATAATGTTAGATNT
ATATGATAGGATATAATGATAGTGATATATGTATTTTATTATATATTGTAAATATTGATTAGTAATAATAAGAAATATAAATTGTNTAAANTATGTTATA
TATATATGTATATATGTATGATATATGGTAGGATGTATTAGTGAAAGTGTTATTGTTGTATGTGTTTGTGGATGTTTTGTAAGATTGTAATAGTTATGTA
GATATATTATTATGTTAGTATTATGTGTTGGTATGTTGTGAGAGTGTTAGTGTGTTAGTAGAAAGTGGTTTTGTTGTTTATTTTGTATGTTATTTAAGAT
GTATGTGGTTGAGTTATTGGTTGTATTATTTTGAAGTAA
>LE_HBa0135G10_SP6_61362 (trimmed for quality and cloning vector)
A

This is probably not a useful sequence.

Problems:
  • High predicted error rate
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0135G10
Clone
Clone name
hba-135g10
LE_HBa0135G10
P135G10
Clone type
BAC
Contamination
none
Estimated length
88,697
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found