Clone Read LE_HBa0135K15_SP6_61564

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0135K15_SP6_61564
Primer
SP6
ID from Seq. Facility
LE_HBa_135_K15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
507 trimmed for vector and quality, 836 raw
Genbank Accession
DU073649
Sequence
>LE_HBa0135K15_SP6_61564 (raw untrimmed)
ATTTCATCCTTTGAAAATTTTAGTCTACTGAGTCAAGTTGGTCAAGAGAGACGAGATTGATCAAAATTCCTCTACAAGCCTTTCATAGTAGCCAGCAAAC
ACAAGAAGCTCCTAATATCGGTTGGAAATGTGTGTCTAGTCCAACTTTGAATTGCTTCTATTTTTGAGGTATCGACACTAATACCTTCACCAGAAACTAT
GTGGCGCAAAAATGGCATAGACTTAAGCCAAAACTCACACTTGGAGAACTTGGCATACATATCCTTTTCTTTCAAAGTCTTAAGTACTATTCTGAGATGA
CTAGAATGATCTTTTTCATTCCTTGAATAGATTAGTATGTCATCCATGAAGACTATGACAAAGATATCTAAATAAGGCTTGAAGACTTTGTTCATAAGAT
CTATGAATGCTGTTGGCGCATTGGTTAAACCAAAGGACATAACCAAAAATTCATAATGCCCAGATCAAGTTCTGAAAACTCTCTTTGGAATATCTAATTC
CCTAACTTTCAACTAATGGTAACATGATCTGAGATCTAATTTTGAGAAGCAGGAATCACCCTAAAGTTTGTCAAAAAGATCATCCATCCTTGGAAAAGGA
TTCTTTTTTTTGATGGGTGACCCTCCACCAATTGGTGTGATCCTTTATCCATCCCTAAGGAAACACCCTTCCTCCCCATAAACATAGATTAATGCGCCCC
TACGTGAAAGTTACGGTCGAATAAATTATTTATTTTATTATATCTCTTCGTTTATCTCTTCTAATGCTTTTCTATCGCTCTATTTTCATCTTCTATCCCT
GAGGTATGCTTGCCTAATATGTATGTCACTTTCAAA
>LE_HBa0135K15_SP6_61564 (trimmed for quality and cloning vector)
CTACTGAGTCAAGTTGGTCAAGAGAGACGAGATTGATCAAAATTCCTCTACAAGCCTTTCATAGTAGCCAGCAAACACAAGAAGCTCCTAATATCGGTTG
GAAATGTGTGTCTAGTCCAACTTTGAATTGCTTCTATTTTTGAGGTATCGACACTAATACCTTCACCAGAAACTATGTGGCGCAAAAATGGCATAGACTT
AAGCCAAAACTCACACTTGGAGAACTTGGCATACATATCCTTTTCTTTCAAAGTCTTAAGTACTATTCTGAGATGACTAGAATGATCTTTTTCATTCCTT
GAATAGATTAGTATGTCATCCATGAAGACTATGACAAAGATATCTAAATAAGGCTTGAAGACTTTGTTCATAAGATCTATGAATGCTGTTGGCGCATTGG
TTAAACCAAAGGACATAACCAAAAATTCATAATGCCCAGATCAAGTTCTGAAAACTCTCTTTGGAATATCTAATTCCCTAACTTTCAACTAATGGTAACA
TGATCTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962089
Expected error %
0.265663
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 229 E Value 1e-62 Identity 75.90% Align. Length 502bp (99.01%) Frame 2
putative retrotransposon protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 229 E Value 1e-62 Identity 75.90% Align. Length 502bp (99.01%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0135K15
Clone
Clone name
hba-135k15
LE_HBa0135K15
C10HBa0135K15
P135K15
Clone type
BAC
Contamination
none
Estimated length
147,276
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found