Clone Read LE_HBa0042K02_T7_63075

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042K02_T7_63075
Primer
T7
ID from Seq. Facility
LE_HBa_042_K02-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
782 trimmed for vector and quality, 875 raw
Sequence
>LE_HBa0042K02_T7_63075 (raw untrimmed)
CTGCCTTGGGACCCTGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATGTGATTGATTAATTGATCCTTTAAATCTTGTGGTTTGAGTGATTT
TGTGATGGATTACTCTTTAAAGGATTTATTTTTCATCCAGTCCGAGGTTTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATCGTGACATTG
AATATCTTGTTACTGGTAATGGAACTTTCTCAACCCATGCCTATACCAAAAATAAGGTCAAAACATGAATAACAAAAGAAAAAGAACACACCTTAATATC
GTATATGGTTAAGCATCTTTAGGCAATTACTAGACATATACTAAAGATGCCAAGAGATGTCAGATAGCCAAAGGAAGCTCATTAGTGCATATATACCCAG
GAATGCATTCTATAGGCTCCTGTCACTAAAATAATACCATTATACCGACACTAATGAGTGTATATGTAGATTCCTTTTCACAGTACTAAAGTAGTTGGAG
TCATAGAATTAATATAAATGATGTTTCTCTTACTTTAGATGAAATTAATGAGTTTGACCTGCAGGGCGGTCACATAATCTTCTTTCAAAGCCTCATTCTT
TTAGGTAACTATCTATTCCCACTTGATGTTGGCGCCTTTATTTGCATGCTAAAGGACAATGTAATATTGAAGGTGGTTGTAGTTTGTGTTGCACTAGCTT
GGAGTTCTTGGGCAGCATACCCCTTCATAAGTACAAATATTAATAACTAGGAGGAAATCTCTTGCTGTGTATCCTATGGTACTCATGTATGTATCTTTTG
GGATTTCTCATTATTGCCATTGATTGGATGGGCATCTTGCCTGGCATATGAAAATGTATGGAGCTGAAAAAAACA
>LE_HBa0042K02_T7_63075 (trimmed for quality and cloning vector)
AGCTTATGTGATTGATTAATTGATCCTTTAAATCTTGTGGTTTGAGTGATTTTGTGATGGATTACTCTTTAAAGGATTTATTTTTCATCCAGTCCGAGGT
TTTTGCTGTTGCATTTGCTCTGCTGGCTGCCGGTGCTGTCATCGTGACATTGAATATCTTGTTACTGGTAATGGAACTTTCTCAACCCATGCCTATACCA
AAAATAAGGTCAAAACATGAATAACAAAAGAAAAAGAACACACCTTAATATCGTATATGGTTAAGCATCTTTAGGCAATTACTAGACATATACTAAAGAT
GCCAAGAGATGTCAGATAGCCAAAGGAAGCTCATTAGTGCATATATACCCAGGAATGCATTCTATAGGCTCCTGTCACTAAAATAATACCATTATACCGA
CACTAATGAGTGTATATGTAGATTCCTTTTCACAGTACTAAAGTAGTTGGAGTCATAGAATTAATATAAATGATGTTTCTCTTACTTTAGATGAAATTAA
TGAGTTTGACCTGCAGGGCGGTCACATAATCTTCTTTCAAAGCCTCATTCTTTTAGGTAACTATCTATTCCCACTTGATGTTGGCGCCTTTATTTGCATG
CTAAAGGACAATGTAATATTGAAGGTGGTTGTAGTTTGTGTTGCACTAGCTTGGAGTTCTTGGGCAGCATACCCCTTCATAAGTACAAATATTAATAACT
AGGAGGAAATCTCTTGCTGTGTATCCTATGGTACTCATGTATGTATCTTTTGGGATTTCTCATTATTGCCATTGATTGGATG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.957209
Expected error %
0.748875
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g18840.1 Score 67 E Value 7e-15 Identity 51.40% Align. Length 279bp (35.68%) Frame 2
68415.m02194 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g30260.1 Score 67 E Value 1e-14 Identity 51.40% Align. Length 279bp (35.68%) Frame 2
68417.m04302 integral membrane Yip1 family protein contains Pfam domain, PF04893: Yip1 domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM62630.1| Score 67 E Value 3e-13 Identity 51.40% Align. Length 279bp (35.68%) Frame 2
unknown [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD08953.1| Score 67 E Value 3e-13 Identity 51.40% Align. Length 279bp (35.68%) Frame 2
expressed protein [Arabidopsis thaliana] gb|AAM14883.1| expressed protein [Arabidopsis thaliana] pir||T01612 hypothetical protein At2g18840 [imported] - Arabidopsis thaliana ref|NP_565442.1| integral membrane Yip1 family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042K02
Clone
Clone name
hba-42k2
LE_HBa0042K02
P042K02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found