Clone Read LE_HBa0042N13_T7_63241

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0042N13_T7_63241
Primer
T7
ID from Seq. Facility
LE_HBa_042_N13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
684 trimmed for vector and quality, 944 raw
Sequence
>LE_HBa0042N13_T7_63241 (raw untrimmed)
ACTGGGTTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCCCAAGCAATGTGGAACAGAATCACTGAAGTAGTTATGTGATAAATCTAA
TAAGATAAGTTTGCTCATGTTACAAATGGATGAAGGTAGTGGACCCTGAAGGGAGTTAAATTTCAGATCAAGATACTCTAGACTATAGTAATGAAACTGT
GGTAGGTGGCCTGTTAATGAATTATGAGAAAGGTTTAGGAACTGCCACGAGTTCCACCACATGCCGCTAAACCAGTTAGGAATTTCACCACAAATCTTAT
TGTTAGAAATATCCAAGTACACAAGTGTGTTTATATTTCTCAAGAAGTGTGGAAAATGCTTCAGTTGACAAGATGATAAGAATAAAGATGATAGGCTAAG
AAAGGTGATATTCATTCCCTCATCAATGGTGATGTTATTTGATGAAATTCCAAGGGTTACAAGATTTGTGAGATTCACAAGTGATTGAGGAAAAGAACCA
CTGAGTTGATTATTGCTTAAATGCAGTTCATATGAATGTTGGGTTTATTTTGATCACTTCATCGGCTATTCCTCTGAATTGGTTATGTTGGAGAGACACT
GAATAAATCATAGGTAGGCTAAACACCCAAGATGGTATGGTACCATTCTGTGAGTTGAAAGACAATATCCACAGAAAACTAGCTCTTGAAAGATGCTCAC
ATTATTATGAAGTGGGCCCAAAAGGGAATTTTTCGACTTGTATCAATATTTAAAACATGTCTAACTTAAATTGGCAACGGGAAACAAACCGATGAACCTG
GTTTTACAAAACTCCAAAAAATATAATCCTGGGGGGTAGATAAAATCCCAGGAATACTGCCCGTGGAAATGATTCTGAAATAATACGATCTTTTAATTTT
TGTTGAGTTCCCTCTGGTATGCGCGATCGCACCACATAATTCCC
>LE_HBa0042N13_T7_63241 (trimmed for quality and cloning vector)
AGCTTCCCAAGCAATGTGGAACAGAATCACTGAAGTAGTTATGTGATAAATCTAATAAGATAAGTTTGCTCATGTTACAAATGGATGAAGGTAGTGGACC
CTGAAGGGAGTTAAATTTCAGATCAAGATACTCTAGACTATAGTAATGAAACTGTGGTAGGTGGCCTGTTAATGAATTATGAGAAAGGTTTAGGAACTGC
CACGAGTTCCACCACATGCCGCTAAACCAGTTAGGAATTTCACCACAAATCTTATTGTTAGAAATATCCAAGTACACAAGTGTGTTTATATTTCTCAAGA
AGTGTGGAAAATGCTTCAGTTGACAAGATGATAAGAATAAAGATGATAGGCTAAGAAAGGTGATATTCATTCCCTCATCAATGGTGATGTTATTTGATGA
AATTCCAAGGGTTACAAGATTTGTGAGATTCACAAGTGATTGAGGAAAAGAACCACTGAGTTGATTATTGCTTAAATGCAGTTCATATGAATGTTGGGTT
TATTTTGATCACTTCATCGGCTATTCCTCTGAATTGGTTATGTTGGAGAGACACTGAATAAATCATAGGTAGGCTAAACACCCAAGATGGTATGGTACCA
TTCTGTGAGTTGAAAGACAATATCCACAGAAAACTAGCTCTTGAAAGATGCTCACATTATTATGAAGTGGGCCCAAAAGGGAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.950859
Expected error %
1.26838
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g28890.1 Score 83 E Value 2e-16 Identity 32.70% Align. Length 618bp (90.35%) Frame 3
68416.m03606 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g56040.1 Score 82 E Value 5e-17 Identity 33.30% Align. Length 618bp (90.35%) Frame 3
68418.m06992 leucine-rich repeat protein kinase, putative contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39468.1| Score 91 E Value 4e-19 Identity 42.00% Align. Length 588bp (85.96%) Frame 3
cf2-like protein [Zea mays]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|XP_550023.1| Score 88 E Value 1e-17 Identity 42.90% Align. Length 606bp (88.60%) Frame 3
putative verticillium wilt disease resistance protein Ve2 [Oryza sativa (japonica cultivar-group)] dbj|BAD52473.1| putative verticillium wilt disease resistance protein Ve2 [Oryza sativa (japonica cultivar-group)] dbj|BAD52788.1| putative verticillium wilt disease resistance protein Ve2 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0042N13
Clone
Clone name
hba-42n13
LE_HBa0042N13
P042N13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found