Clone Read LE_HBa0048E18_SP6_63586

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0048E18_SP6_63586
Primer
SP6
ID from Seq. Facility
LE_HBa_048_E18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1249 raw
Sequence
>LE_HBa0048E18_SP6_63586 (raw untrimmed)
CTCTTTTTTTTCTGCCTCTATTGTTTTTTCTTGTTTTCGTCCGTCCATAGATCCATGGGCGGTAATTTTACCGTGAACTCCTGATTAATTAAAGAGGCAT
AAATTCACCCCTTTCCTTTTTCACAGAGAAGAGTGCATGCGACTTTGGCCTAGATGCGACATGAGCTCCCTTCCCCTTTGACTAGGAGTCCGGCTAGTAG
TGCTAATCTTCCTCTATATTTGCTCATTGTATCCACATTTCTCATCTGAGAGTCTGCTGTCTACGTCCCTCCTACTTCTTATACATAGTTAATGTTTGTG
ATGAATTCTATTTCTATTCTTACTTTTTTTTCTGTGTTATTGTTATTAGAATGTTTTATTATGTTTACGAATATAATATATTATCTTAATCCTATATTTC
TTCATTTATCTATATTAGTCTCTTTTTATTGCTTTTTTGTGTGTTTTACTATTTTTGTTTACTGTTTATTTTTATTAGTACACTTCGGGATACCTAGTGG
ATAGGGGATGCTGATCTAAATGATAGTTGAGATATGTCGATGAATGTGTATAAGATACTAAAATTGATATGAATTCTTATTTTTTCTTTTAGTGTATTAG
TGTTATATTCTATTTTTATTTTTTATTTGTACGTTTTATTTCGTGCTATCCTTTTTCTTTTTGTGTTTCTTTTTTGATCTTTTATTCAGTTGATCGATGT
TATAACTTGAGACTTGCTGCTCTATTGCCTATACTGGTTGTTTCTATCTGTCGGCGCGGCAATATGAATCTAATGGTCTTACGAAGATCTCCGCATGGAA
CTNGACGACTGATCGAATAATTTATATGATGTTTGTTTGTATGGTGTAGATTTACGGATCACAACATACGTCGTCCGACTTTGATATGTAATTCTGCCCT
CTCAATAGTGCTCTTAGTTCGTATTATATATCTCGTATTATATATGTTTGGTTAGCGTATATTTATTATAATTGATATCGCTATTGTGTANAATTCATTG
TTTAGGTGTATATGTGTAGAGGGGACTGACACTACTTGGTTGAGTTTGTGAGAATATTTCGGCTCCGCCTACCCTCTCCATATGACAGCTAACTTTCACC
GCCTACATTTTCTGTCTGTTTACTGAGTCTCCGCTTTCTAAGTTTCTTATTTATTCTAATCATATGATAATATATATTGCTTGACTCTCTATGGGTTCCG
TTTGTTTTATAGTGTATATTTAGTTTCTAATTTTTATTTTCTTTGTTTC
>LE_HBa0048E18_SP6_63586 (trimmed for quality and cloning vector)
TT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.50654
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0048E18
Clone
Clone name
hba-48e18
LE_HBa0048E18
C12HBa0048E18
P048E18
Clone type
BAC
Contamination
none
Estimated length
107,974
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found