Clone Read LE_HBa0012P18_SP6_6514

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0012P18_SP6_6514
Primer
SP6
ID from Seq. Facility
LE_HBa_012_P18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
529 trimmed for vector and quality, 909 raw
Genbank Accession
DU025954
Sequence
>LE_HBa0012P18_SP6_6514 (raw untrimmed)
GAAGTGCNCTTCAGTTATCTAGTGGACACNNNNNNNNNNNNNCNNNACNANNNNANCNNNNAANACNNANCAAAACNAACACCACCTTTTTCGGAACANA
AAAAAAAATCATTTTCAATGTTGCTTTCCTCAAGCATGGATGTGCTCCTAAAATTCTGAGATTTATCCGTAATGAACCATTCGATCATAAAGTGAGGACC
ATTACTAGCGATAATTCTCAAATTTAATACTTTGGCAAAGAGTTCTTGATGCCTTCGGTAGAAATGTGTTGTAGGGTAAATAAGGAGAGTAGAAACAAGA
GAGTAGCTGATGTGGTTGAGGCACTAATAGGTGCCTACCTTAGCTTGCACAGGCAAAGTAGCAGCTACATCATTTATGAAATAATTGGGATTGACATTAA
ATTTATTGATGCACCTTTGCTAAGTTACTTCATCGTTAGTGCTGAGAAGATAGTCAATGTACGGTACTTGAATATCAGTTCTACCNCACAAGTTTCACGA
CCCTTCGTTGTTTGTTAAAATGCTTACTCGCGGATCTTACATGCTACCTGAGATTCCATGATGTTATTAGCAATTGGAATTTCTTGGAGATGTAGTGCTA
GATTATGTTCTTACAACACATCTCTATTTTAAATATTTCGAGACTGATTCCAAGACTAATTACCAATTTGCGGTCTATTCTTGTAAATAATGAATGTTAT
GCTCCAATCTGAAAGTAATGGTAGTATGCCATGAACATATTGGTCATGCCTCGCTAGAATCCTCAAAGGGAAATATGGTGGACCAATGCAGGAATTTTGA
GAAATATAATTTCCGTGTTTCTTGTTTAAATGGGGAAAAGTGAAAAATTCTTTTCCCAAAATAAGGCTTTGAAAAATATTATTGGAATTACTTTTGCTAG
GAATTGGGA
>LE_HBa0012P18_SP6_6514 (trimmed for quality and cloning vector)
AAAAAAAATCATTTTCAATGTTGCTTTCCTCAAGCATGGATGTGCTCCTAAAATTCTGAGATTTATCCGTAATGAACCATTCGATCATAAAGTGAGGACC
ATTACTAGCGATAATTCTCAAATTTAATACTTTGGCAAAGAGTTCTTGATGCCTTCGGTAGAAATGTGTTGTAGGGTAAATAAGGAGAGTAGAAACAAGA
GAGTAGCTGATGTGGTTGAGGCACTAATAGGTGCCTACCTTAGCTTGCACAGGCAAAGTAGCAGCTACATCATTTATGAAATAATTGGGATTGACATTAA
ATTTATTGATGCACCTTTGCTAAGTTACTTCATCGTTAGTGCTGAGAAGATAGTCAATGTACGGTACTTGAATATCAGTTCTACCNCACAAGTTTCACGA
CCCTTCGTTGTTTGTTAAAATGCTTACTCGCGGATCTTACATGCTACCTGAGATTCCATGATGTTATTAGCAATTGGAATTTCTTGGAGATGTAGTGCTA
GATTATGTTCTTACAACACATCTCTATTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.96287
Expected error %
0.934605
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g03300.1 Score 71 E Value 3e-22 Identity 29.80% Align. Length 519bp (98.11%) Frame 3
68416.m00327 DEAD/DEAH box helicase carpel factory-related similar to RNA helicase GB:AAF03534
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAF26098.1| Score 71 E Value 1e-20 Identity 29.80% Align. Length 519bp (98.11%) Frame 3
unknown protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_566199.3| Score 71 E Value 1e-20 Identity 29.80% Align. Length 519bp (98.11%) Frame 3
DEAD/DEAH box helicase carpel factory-related [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0012P18
Clone
Clone name
hba-12p18
LE_HBa0012P18
C01HBa0012P18
P012P18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found