Clone Read LE_HBa0033B19_SP6_6612

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033B19_SP6_6612
Primer
SP6
ID from Seq. Facility
LE_HBa_033_B19-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1566 raw
Sequence
>LE_HBa0033B19_SP6_6612 (raw untrimmed)
CGTGTTACTATTATTCTCATCCCGCCACGATGCGCTGCTCGCTATGTCGAAGTAGCTCACATGTCAGTCGTACGACATGCGTGAGTCGTCACTNGATGCT
ATTCGTACTTCTGTCTCTCGAGAATGTTCGTGTAGTAGACACTATACNATGTGGAGTACAGAGATCGACTAGAGGTTTACGCAGTAGTATATCAACCTAT
CCGTCTCGCCAGAGCTCATACATAAACTTATGGATACTGAGCGTGCGTAGAGAGTCAGGAGTCTCCATATAATTTACGACGGNGAGTNCGATAAGCTCCT
CNCNCGTACCTTGCTATACTCAAGACAGTAGACAGAAGAAGATGCATCTCTTCTGGTTCGTTTATGTCTCTTTGGNGTAGTACTCACACAGAGANCTACA
ATCATGTACATATTCGATTCGAGCTCGTCGCGCACATCCACCGATCCATAACGTCTTGCGTCATGGACGGAGTTATGACCGACGTAGTACTACGTAGTCA
GAAGCGATCATACATCGATGACGAACAATGCTATAGCAGTATCTTGAATGGCGACCACATNACATCGTGCGTCGGAGAGATGTAAGATCGCATCTACATC
ATGTCGCATCGTCGTGCGAACAGTACTACTAGCGAACAGATTCTACACGCACTCTTATCTGTCTATGTGTATGAAGAGACAGAATGGCCGATATCCTGAT
AGCTAGTCACTGTGGACATGTCTTAACATGTAAGTGCGTACTCTCAATCACACCTCGAAGGTAGCTTGCATTGNCTTCNTGACGTAAGCATGTGGTAGCC
TATGTGTATTATTTCTTTTCTCATGCGAGCGTTGCCGCTAGCGTACAGACACCAACAACCTGTAGCGTTACTCCAACGACCGTACACTTTCCCACACACC
ACCTCCTATCGCGTCTTGAGGAACGCGTTACTCTCCTACTTGTAGACTTGACATCGAGACTTCACCATTCGTGTGTCTCCACTATTATAATCTCAAAATG
TGTCATATTCGGNCATCTATAATCTGTACCTCCAACCCAGAAAGAAGCGACCTTTAATCGTTTATACGTCCCGTGTCTCTGCCATGACTTCTCCAAATGC
CCTCTCGAGAGACTTCCTCATTCAAACTACACGCCTGAACTGCCACGAATCTCTATGCAACAACGTGGTGGCCCTTGGAATATTCTCTGTGACCTCCTCC
ATTTCGTTCTATAATGTAAGGAAGGGGGGTGCGTGAACCTATCGGACTCGACAACTGCCGTATCTTATGCGGAAATAGGATCGCGGTCACTGTCATTACT
TCTACCCTGCGCTTAACCGCATGTGTGTTTGTTACGTGTGCATAGCTCACACTCCAGAGGAGGGCACAACATCTTCTTTGACATCCTCCAACCGCAAACA
ACTCAAACCTTCGTACGCCATCTTCAATCTCTTATCCGGTGGACGCTGGTCNCACCTTGATCTTCTTCGAGGCCTCGCTCTCATTTCTCTAAGCCTTGTC
TCTTTTGTGCATGTGCTACGACTGTGGTTCTCTCCTTACCAAGCTCAATATCTTCTCCTCTCCATN
>LE_HBa0033B19_SP6_6612 (trimmed for quality and cloning vector)
GC

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.3948
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033B19
Clone
Clone name
hba-33b19
LE_HBa0033B19
P033B19
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found