Clone Read LE_HBa0186M17_SP6_66272

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0186M17_SP6_66272
Primer
SP6
ID from Seq. Facility
LE_HBa_186_M17-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
44 trimmed for vector and quality, 946 raw
Sequence
>LE_HBa0186M17_SP6_66272 (raw untrimmed)
CCCGGTCTAGTTTGTTTTGGTTCACTCGATCACATAGGGTGTTGGAATATGAGTGGCCGGTTGACGATCCGGACCACTATGGGTCGGCATCCAAGGAGGA
ACAGAGAGATGTTGACGAAGGGGAGTTAACCAAGTCAGCTCGGCAACTAATCCACACAGATGAGCGATACTCAGCTTACGCGGATGATAAAGAAATGGAA
GCTTGTTTTTTTCCACTTCCATGATATTGGAGAACCTCCCAAACTAATAAAGAACCCTCTTATCGACTGAGGAGAGTCGGGATAGGACGCCCAATCTGCA
TCTGACAACGCAGAGATGGTGAA
AGAATGAGAATCTATGAAAAAAATGCCTTGATTAGGTGAACCTTTTGAGTAACAAAGAGCTCTTAGAGCAACTGTAA
AATATTTTTCACACGGTTGTTGCATGGATTGATTGAGGTTCAATATGGCATAGCATAGATCTGGATGTGTGTGTGTTGAATAATTAACCTTTTTAATGAC
GTGCCGATTAATTGTAGGATCTGACATAAGCTTTCCTGAATCTGGAGGACATTTGCGAGAAGGATCCTTGGGGGAAGACCCAGAGTGCAGATGAGAAATG
TCTAACTCCGCCAGAATATCTAAGATATATTTCCTTTGAATGATAAGAAGCCCATTAACTTCGCTCATAATTTCCATTCCTAGGAAATACTGAAGCCAAC
TTAAATCTATGAGTTTGAACTCAACATGTAAGAGATCTTTGAAACGCTGAATTTCGGTCACGTCATTTCTTGTATTGAGAATGGTCTCGACATCTACAGA
AACAATAGAAACTTATTCACCTGTATTTTTTAAAAAGGAAGGGGAGGCTTTTTATGATCCATATACCCCTTGAATTGCAATCCACATTAAGTTTTGTATA
CTATTTTTGGGAATTTTCATTAAACTAATAGCGCATTTTAAAGGAA
>LE_HBa0186M17_SP6_66272 (trimmed for quality and cloning vector)
AGAATGAGAATCTATGAAAAAAATGCCTTGATTAGGTGAACCTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.77952
Expected error %
1.40591
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0186M17
Clone
Clone name
hba-186m17
LE_HBa0186M17
C08HBa0186M17
P186M17
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found