Clone Read LE_HBa0128E06_SP6_68938

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0128E06_SP6_68938
Primer
SP6
ID from Seq. Facility
LE_HBa_128_E06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
683 trimmed for vector and quality, 832 raw
Sequence
>LE_HBa0128E06_SP6_68938 (raw untrimmed)
GTTTTCTGTTAAGAGATGTGGGCAACACACTCCTGCTCATCGGAAGTGCGTTTATTACTAGACTTAAGGCCATCCCTAGCAGATGGTTCATCCCCTTTAA
TCAAAAGATTGGACGGCCCGAGGAAACCTTTCCACGCCTCCGTTACCTTTTGGGAGGCCTAAGCCCCATAGGAACTGTCTACTTGGGACTGTGACTTGGT
CTGTATGTCCAGACACAAGGTTAAAATTCTAGCCCTTCCACAGTGGTATCTCACTGATGCCCCAGGGAAGGAGGCCTTGTTCACCTTCCACCTAAGCTGC
GCAGGAAAGCCCCAAAGCCAATCCCAGGGAAAAGTGAAGCTTCACAGGATCTTTCGGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTTCTATTT
CACTGAGCCTCCCTCGTGCCCAGATTTATAGAGGCAAATGGTAGACCAGGGAATTTTTATAATATGGGACAGGAAGGTGCAGAAAGGGGATGTAATCTAT
ACTAAGGAACACCCACTCACCTGATGTTTTGTCTCAGATTTGAAGGGGAGCCTGTCTCAGGTTCCAGTTGTGGAAACAACCTCTTGCAGAAATACAGGGT
AAGGTTGTGTATGATAGACCCTTATGGTCCAGCCCTTCCCCAGATCCTGCGTATACCCCAGCTGCTTATTGCACCGGGTTGACTCTTTTTAAATAGGGGT
AACTTGCACCTTTCTGGGTTTAGTATATTAAGGTCAAACAGAATTCTTTTATCCCTCTCTCAGTGGCAAACCATTCTTAAAGTTGAGAATGGGGAAGGGG
CTTCTAAAGCCATTTTCCTATAACTTTTTTTC
>LE_HBa0128E06_SP6_68938 (trimmed for quality and cloning vector)
AACACACTCCTGCTCATCGGAAGTGCGTTTATTACTAGACTTAAGGCCATCCCTAGCAGATGGTTCATCCCCTTTAATCAAAAGATTGGACGGCCCGAGG
AAACCTTTCCACGCCTCCGTTACCTTTTGGGAGGCCTAAGCCCCATAGGAACTGTCTACTTGGGACTGTGACTTGGTCTGTATGTCCAGACACAAGGTTA
AAATTCTAGCCCTTCCACAGTGGTATCTCACTGATGCCCCAGGGAAGGAGGCCTTGTTCACCTTCCACCTAAGCTGCGCAGGAAAGCCCCAAAGCCAATC
CCAGGGAAAAGTGAAGCTTCACAGGATCTTTCGGTCCAGGTGCAAGTAGTCTGCATCTTCACAGACATGTTCTATTTCACTGAGCCTCCCTCGTGCCCAG
ATTTATAGAGGCAAATGGTAGACCAGGGAATTTTTATAATATGGGACAGGAAGGTGCAGAAAGGGGATGTAATCTATACTAAGGAACACCCACTCACCTG
ATGTTTTGTCTCAGATTTGAAGGGGAGCCTGTCTCAGGTTCCAGTTGTGGAAACAACCTCTTGCAGAAATACAGGGTAAGGTTGTGTATGATAGACCCTT
ATGGTCCAGCCCTTCCCCAGATCCTGCGTATACCCCAGCTGCTTATTGCACCGGGTTGACTCTTTTTAAATAGGGGTAACTTG

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.972428
Expected error %
0.275213
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 335 E Value 1e-93 Identity 91.30% Align. Length 297bp (43.48%) Frame 2
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0128E06
Clone
Clone name
hba-128e6
LE_HBa0128E06
C03HBa0128E06
P128E06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found