Clone Read LE_HBa0128I11_SP6_69140

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0128I11_SP6_69140
Primer
SP6
ID from Seq. Facility
LE_HBa_128_I11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
515 trimmed for vector and quality, 859 raw
Genbank Accession
DU074164
Sequence
>LE_HBa0128I11_SP6_69140 (raw untrimmed)
GTTATCTTGGGTAAGGCAACTTTCTCTAGCAAGCAACCAGCCATGGAAAGCTCACAACCTTGGTAGGAACTTTAGCCTTCCAAATGCACTTCCATGGGCA
ATTCACAATGGGTTGGCTTGTCCGTGAAAGGTTAAGATAAGCAGAATTAACAGTATAAATCCCATTATTGTTTCTATTCCAGTAAAGAGAATCTTCTTCC
TCCTTGAGACCTATGAAAGCAAGTAGGAAAAAGATCATTGATTCTCCACAGATCCCTATCATTCAACCCTCTCCTGAAGATGAAATTCCAGTCATTCAGT
CCCCAAGCACTATCCAGTATGATGTCAGGAAGTGATGCTATATACAAAAACTCAGGAAAAATATCTTCTAGTGGCCCATGACTTACCCATTTATCATGCC
AAAATGAAGTCCTCCCATTGCCCACCCTTGTGTATCATCTGAAAAGAATCCCATAGTTGTCTGATAGCTTTCCAGATCCCTGTCACATGAAGGTTGTTGA
CTGGACTTGTACACCACTGATCTGTCTGGCTATATTTTTCACCAATGAATATTCTCCACAAGGGATTAGGTTCAGAACTATACCTCCACAATCACTTTAT
GAGTAGGCTTTGTATTATGTGCTTTTAAGTTTCTTAAGAACTATGCCCCCTTCTTTTCTTGTTAACTAATGAGAGATTCCATTTAACCACTTTCTGTGTT
TCTTCTTATTTTTGTACGCTGTCTTGTGTAATTTCTTCTTAAGTTTCACTATTATATTTTACTGTTGTTTTTCTCCTTGTTTTTTAATCAAAACCGCTTG
ATCTTCTTGGTCAATAACTATCCGTTTTTTTTGCGCCCTTTATTGAGTAGATAGTGAAC
>LE_HBa0128I11_SP6_69140 (trimmed for quality and cloning vector)
CTAGCAAGCAACCAGCCATGGAAAGCTCACAACCTTGGTAGGAACTTTAGCCTTCCAAATGCACTTCCATGGGCAATTCACAATGGGTTGGCTTGTCCGT
GAAAGGTTAAGATAAGCAGAATTAACAGTATAAATCCCATTATTGTTTCTATTCCAGTAAAGAGAATCTTCTTCCTCCTTGAGACCTATGAAAGCAAGTA
GGAAAAAGATCATTGATTCTCCACAGATCCCTATCATTCAACCCTCTCCTGAAGATGAAATTCCAGTCATTCAGTCCCCAAGCACTATCCAGTATGATGT
CAGGAAGTGATGCTATATACAAAAACTCAGGAAAAATATCTTCTAGTGGCCCATGACTTACCCATTTATCATGCCAAAATGAAGTCCTCCCATTGCCCAC
CCTTGTGTATCATCTGAAAAGAATCCCATAGTTGTCTGATAGCTTTCCAGATCCCTGTCACATGAAGGTTGTTGACTGGACTTGTACACCACTGATCTGT
CTGGCTATATTTTTC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957523
Expected error %
0.280858
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89733.1| Score 55 E Value 1e-14 Identity 42.40% Align. Length 412bp (80.00%) Frame 2
hypothetical protein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT40556.1| Score 52 E Value 1e-13 Identity 40.00% Align. Length 393bp (76.31%) Frame 2
hypothetical protein PGEC542.21 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0128I11
Clone
Clone name
hba-128i11
LE_HBa0128I11
P128I11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found