Clone Read LE_HBa0136H06_SP6_69850

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0136H06_SP6_69850
Primer
SP6
ID from Seq. Facility
LE_HBa_136_H06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
705 trimmed for vector and quality, 744 raw
Genbank Accession
DU072534
Sequence
>LE_HBa0136H06_SP6_69850 (raw untrimmed)
GCCTTCTCCTTTTCTGTTTTGCCATAACACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTAATCCTTTTAGGTGCACCAGCATCTTCAT
TCCTTTAGTACTCATGTCTTTAAGTCTGTTATGCCACAGACATGAACTGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAATGGTGTAC
AAGGTTCCAGATTTGGTGCCACGAGCTACTACCATAGCACTTTTCACGATCTTCCACGAACATTTCCCAAACTCTGCTGCATATCCCGTGCTATCCAACT
GACCAACAGAGATCATATTTTTCTTGATCCCAGGAATATATCTGACATCCTCCAATGTCCACTGGTTTCCCAAGGTGGTCTTTATGCAAACATCCCCCTT
TCCTTCAATCTCTAAGGCTTTATTGTCAGCAAGATATACTTTTTCAAAATTTCCAGATTTAAAATTTTGGAACAACTCCTTGCTTGGAGACGAATGTAAA
GATGCACCAGAATCCAAAATCCATGATTCAACCGGGCTGTTCACACTAAGGATTAGAGTATCCCCAATGTCCTCTGCTGAATTTACAGAATCATTGTCAT
CTCCAAATTTTTGATTCTGTTTCTTCTTTGGCTTTGTACAGTTCGTCCGAAAGTGTCCTTTTTCTCCACAGTTTCAACAAGTCACGTTTGATCTGTTCGG
TGATTTTTCCTCGATTCCTTGATTTTGATCGACCATGGTGATTT
>LE_HBa0136H06_SP6_69850 (trimmed for quality and cloning vector)
AACACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTAATCCTTTTAGGTGCACCAGCATCTTCATTCCTTTAGTACTCATGTCTTTAAGT
CTGTTATGCCACAGACATGAACTGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAATGGTGTACAAGGTTCCAGATTTGGTGCCACGAG
CTACTACCATAGCACTTTTCACGATCTTCCACGAACATTTCCCAAACTCTGCTGCATATCCCGTGCTATCCAACTGACCAACAGAGATCATATTTTTCTT
GATCCCAGGAATATATCTGACATCCTCCAATGTCCACTGGTTTCCCAAGGTGGTCTTTATGCAAACATCCCCCTTTCCTTCAATCTCTAAGGCTTTATTG
TCAGCAAGATATACTTTTTCAAAATTTCCAGATTTAAAATTTTGGAACAACTCCTTGCTTGGAGACGAATGTAAAGATGCACCAGAATCCAAAATCCATG
ATTCAACCGGGCTGTTCACACTAAGGATTAGAGTATCCCCAATGTCCTCTGCTGAATTTACAGAATCATTGTCATCTCCAAATTTTTGATTCTGTTTCTT
CTTTGGCTTTGTACAGTTCGTCCGAAAGTGTCCTTTTTCTCCACAGTTTCAACAAGTCACGTTTGATCTGTTCGGTGATTTTTCCTCGATTCCTTGATTT
TGATC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960741
Expected error %
0.309291
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 156 E Value 6e-37 Identity 12.10% Align. Length 704bp (99.86%) Frame 2
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 147 E Value 3e-34 Identity 11.90% Align. Length 686bp (97.30%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0136H06
Clone
Clone name
hba-136h6
LE_HBa0136H06
P136H06
Clone type
BAC
Contamination
none
Estimated length
120,631
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found