Clone Read LE_HBa0136K02_SP6_69986

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0136K02_SP6_69986
Primer
SP6
ID from Seq. Facility
LE_HBa_136_K02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
738 trimmed for vector and quality, 772 raw
Genbank Accession
DU072626
Sequence
>LE_HBa0136K02_SP6_69986 (raw untrimmed)
CATTCTGGAGAAGGTGGAAGATTAAAGCCAGGCTAGTGGCCAAGGGCTATAGCCAACAAGCTGGGATGGATCACTTTGAGACTTTTTCACCAGTTGCAAA
AATGGTGACTGTCCCATCTCTGATTGCTCTTGCAGCCTCTAATATGTGGTATATCTATCAAATGGATGTACATAATGCTTTTCTAAATGGTGACTTACTA
GAGGAAGTATATATGACTATTCCTGAGGGGTTTGCAAGACAGGGGGAGTCTCACAAGGTCTGCAAACTTCATAAGTCTTTATATGGGTTGAAACAAGCTC
CAAGGCAGTGGAACAAAAAACTGACCGATGCTCTTATTCAAATGGGATTTAGACAAAGTCATTATGATTATTCTTTGTTCATCAAAAGGGCAGGAAAAGA
GTTAGTAATAATTCTGGTATATGTGGATGATTTGATAGTAACTGGAAATAGTCAGACATTGATAAACAAAGCAAGGAAGGATTTACAGCATAGCTTCAAG
ATGAAAGATCTTGGAGAACTTAAATTCTTCCTGGGAATTGAAGTAGCCAGATCAAATGAAGGTATTGTAATGTGTCAAAGAAAATATGCATTAGAATTGG
TTGCTGAAACTGGAATGAGTGGAGCAAAACCAGCAAGTACACCATTTGAGATAAATCAAAAGCTAACTTCTGCAGAATATGATAAACATGTATCAAGCAA
AGCTGAAATTGGTGATGAAGTATTGGAAAATCATGCATCATATCCAAAAACTAGTGGGGAAAAACTTCTATA
>LE_HBa0136K02_SP6_69986 (trimmed for quality and cloning vector)
AAGCCAGGCTAGTGGCCAAGGGCTATAGCCAACAAGCTGGGATGGATCACTTTGAGACTTTTTCACCAGTTGCAAAAATGGTGACTGTCCCATCTCTGAT
TGCTCTTGCAGCCTCTAATATGTGGTATATCTATCAAATGGATGTACATAATGCTTTTCTAAATGGTGACTTACTAGAGGAAGTATATATGACTATTCCT
GAGGGGTTTGCAAGACAGGGGGAGTCTCACAAGGTCTGCAAACTTCATAAGTCTTTATATGGGTTGAAACAAGCTCCAAGGCAGTGGAACAAAAAACTGA
CCGATGCTCTTATTCAAATGGGATTTAGACAAAGTCATTATGATTATTCTTTGTTCATCAAAAGGGCAGGAAAAGAGTTAGTAATAATTCTGGTATATGT
GGATGATTTGATAGTAACTGGAAATAGTCAGACATTGATAAACAAAGCAAGGAAGGATTTACAGCATAGCTTCAAGATGAAAGATCTTGGAGAACTTAAA
TTCTTCCTGGGAATTGAAGTAGCCAGATCAAATGAAGGTATTGTAATGTGTCAAAGAAAATATGCATTAGAATTGGTTGCTGAAACTGGAATGAGTGGAG
CAAAACCAGCAAGTACACCATTTGAGATAAATCAAAAGCTAACTTCTGCAGAATATGATAAACATGTATCAAGCAAAGCTGAAATTGGTGATGAAGTATT
GGAAAATCATGCATCATATCCAAAAACTAGTGGGGAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.939466
Expected error %
0.265142
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g23160.1 Score 199 E Value 1e-51 Identity 15.50% Align. Length 677bp (91.73%) Frame 1
68417.m03342 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89728.1| Score 244 E Value 2e-63 Identity 17.50% Align. Length 731bp (99.05%) Frame 1
putative retroelement pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAE05707.2| Score 218 E Value 2e-55 Identity 16.10% Align. Length 731bp (99.05%) Frame 1
OSJNBb0065J09.3 [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0136K02
Clone
Clone name
hba-136k2
LE_HBa0136K02
C03HBa0136K02
P136K02
Clone type
BAC
Contamination
none
Estimated length
37,360
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found